Biosensors and Bionstruments Laboratory

Research Output

2020

Fiber Optic Refractive Index Distributed Multi-Sensors by Scattering-Level Multiplexing with MgO Nanoparticle-Doped Fibers

Ayupova, T., Tosi, D., Shaimerdenova, M., Korganbayev, S., Sypabekova, M., Bekmurzayeva, A., Blanc, W., Sales, S., Guo, T. & Molardi, C., Mar 1 2020, In : IEEE Sensors Journal. 20, 5, p. 2504-2510 7 p., 8902068.

Research output: Contribution to journalArticle

Spatial multiplexing of refractive index distributed sensors by means of high-scattering MgO nanoparticle doped optical fiber

Shaimerdenova, M., Bekmurzayeva, A., Ayupova, T., Sypabekova, M., Korganbayev, S., Dukenbayev, R., Blanc, W., Molardi, C. & Tosi, D., Jan 1 2020, Optical Fibers and Sensors for Medical Diagnostics and Treatment Applications XX. Gannot, I. & Gannot, I. (eds.). SPIE, 112330U. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11233).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2019
Open Access

CTHRC1: A New Candidate Biomarker for Improved Rheumatoid Arthritis Diagnosis

Myngbay, A., Bexeitov, Y., Adilbayeva, A., Assylbekov, Z., Yevstratenko BP, Aitzhanova RM, Vyacheslav A. Adarichev, Matkarimov, B. & Kunz, J., Jun 12 2019, In : Frontiers in Immunology. 10, JUN, p. 1353 1353.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Functionalized etched tilted fiber Bragg grating aptasensor for label-free protein detection

Sypabekova, M., Korganbayev, S., González-Vila, Á., Caucheteur, C., Shaimerdenova, M., Ayupova, T., Bekmurzayeva, A., Vangelista, L. & Tosi, D., Dec 15 2019, In : Biosensors and Bioelectronics . 146, 111765.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Ile351, Leu355 and Ile461 residues are essential for catalytic activity of bovine cytochrome P450scc (CYP11A1)

Glyakina, A. V., Strizhov, N. I., Karpov, M. V., Dovidchenko, N. V., Matkarimov, B., Isaeva, L. V., Efimova, V. S., Rubtsov, M. A., Novikova, L. A., Donova, M. V. & Galzitskaya, O. V., Mar 1 2019, In : Steroids. p. 80-90 11 p.

Research output: Contribution to journalArticle

Mechanism of stimulation of DNA binding of the transcription factors by human apurinic/apyrimidinic endonuclease 1, APE1

Bazlekowa-Karaban, M., Prorok, P., Baconnais, S., Taipakova, S., Akishev, Z., Zembrzuska, D., Popov, A. V., Endutkin, A. V., Groisman, R., Ishchenko, A. A., Matkarimov, B., Bissenbaev, A., Le Cam, E., Zharkov, D. O., Tudek, B. & Saparbaev, M., Oct 1 2019, In : DNA Repair. 82, 102698.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Refractive Index Sensor by Interrogation of Etched MgO Nanoparticle-Doped Optical Fiber Signature

Korganbayev, S., Shaimerdenova, M., Ayupova, T., Sypabekova, M., Bekmurzayeva, A., Blanc, W., Molardi, C. & Tosi, D., Aug 1 2019, In : IEEE Photonics Technology Letters. 31, 15, p. 1253-1256 4 p., 8747358.

Research output: Contribution to journalArticle

2 Citations (Scopus)

АПТАМЕРЫ ДЛЯ ОПРЕДЕЛЕНИЯ БАКТЕРИАЛЬНОЙ КЛЕТКИ MYCOBACTERIUM TUBERCULOSIS НА ОСНОВЕ МРТ64 СЕКРЕТИРУЕМОГО БЕЛКА, КОМПОЗИЦИЯ СОДЕРЖАЩАЯ ДНК АПТАМЕР И СПОСОБ ДЕТЕКТИРОВАНИЯ МИКОБАКТЕРИЙ В КЛИНИЧЕСКОМ ОБРАЗЦЕ

Translated title of the contribution: Aptamers for determining bacterial cell Mycobacterium tuberculosis based on secreted protein MPT64, composition containing DNA aptamer and method of detecting mycobacteria in a clinical sampleKanayeva, D., Sypabekova, M., Bekmurzayeva, A. & Li, Y., May 24 2019, IPC No. C12P 19/34 (2006.01), C12Q 1/00 (2006.01), Ministry of Justice of the Republic of Kazakhstan, Patent No. 33639, Oct 30 2017, Priority date Jan 21 2020

Research output: Patent

2018

Aberrant repair initiated by the adenine-DNA glycosylase does not play a role in UV-induced mutagenesis in Escherichia coli

Zutterling, C., Mursalimov, A., Talhaoui, I., Koshenov, Z., Akishev, Z., Bissenbaev, A. K., Mazon, G., Geacintov, N. E., Gasparutto, D., Groisman, R., Zharkov, D. O., Matkarimov, B. & Saparbaev, M., Jan 1 2018, In : PeerJ. 2018, 12, e6029.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Characterization of DNA ADP-ribosyltransferase activities of PARP2 and PARP3: New insights into DNA ADP-ribosylation

Zarkovic, G., Belousova, E. A., Talhaoui, I., Saint-Pierre, C., Kutuzov, M. M., Matkarimov, B. T., Biard, D., Gasparutto, D., Lavrik, O. I. & Ishchenko, A. A., Jan 1 2018, In : Nucleic Acids Research. 46, 5, p. 2417-2431 15 p.

Research output: Contribution to journalArticle

35 Citations (Scopus)

Design and Simulation of a New Coaxial Probe for Near Field Scanning Optical Microscopy

Shomanov, A. S., Yessenbayev, Z. A., Matkarimov, B. & Beketayev, K. B., Jan 1 2018, In : Materials Today: Proceedings. 5, 11, p. 22741-22748 8 p.

Research output: Contribution to journalConference article

Detection of thermal gradients through fiber-optic Chirped Fiber Bragg Grating (CFBG): Medical thermal ablation scenario

Korganbayev, S., Orazayev, Y., Sovetov, S., Bazyl, A., Schena, E., Massaroni, C., Gassino, R., Vallan, A., Perrone, G., Saccomandi, P., Caponero, M. A., Iadicicco, A. & Tosi, D., 2018, In : Optical Fiber Technology. 41, p. 48-55 8 p.

Research output: Contribution to journalArticle

Open Access
File
19 Citations (Scopus)
43 Downloads (Pure)

Detection of tilted fiber bragg grating fiber-optic sensors with short-term KLT: Towards low-cost biosensors

Bekmurzayeva, A., Shaimerdenova, M., Abukhanov, Y., Sypabekova, M. & Tosi, D., Jan 1 2018, In : Proceedings of IEEE Sensors. 2018-January, 8630292.

Research output: Contribution to journalConference article

1 Citation (Scopus)

Detection of tilted fiber Bragg grating fiber-optic sensors with short-term KLT: Towards low-cost biosensors

Shaimerdenova, M., Bekmurzayeva, A., Sypabekova, M., Abukhanov, Y. & Tosi, D., Jan 1 2018, Optics in Health Care and Biomedical Optics VIII. Gu, Y., Luo, Q., Li, X., Tang, Y. & Zhu, D. (eds.). SPIE, Vol. 10820. 108203A

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fabrication and Interrogation of Refractive Index Biosensors Based on Etched Fiber Bragg Grating (EFBG)

Bekmurzayeva, A., Shaimerdenova, M. & Tosi, D., Oct 26 2018, 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-July. p. 4289-4292 4 p. 8513240

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fiber optic refractive index sensors through spectral detection of Rayleigh backscattering in a chemically etched MgO-based nanoparticle-doped fiber

Sypabekova, M., Korganbayev, S., Blanc, W., Ayupova, T., Bekmurzayeva, A., Shaimerdenova, M., Dukenbayev, K., Molardi, C. & Tosi, D., Dec 15 2018, In : Optics Letters. 43, 24, p. 5945-5948 4 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Synthetic coal fly ash-derived zeolites doped with silver nanoparticles for mercury (II) removal from water

Tauanov, Z., Tsakiridis, P. E., Mikhalovsky, S. V. & Inglezakis, V. J., Jul 21 2018, In : Journal of Environmental Management. 224, p. 164-171 8 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

The role of the N-terminal domain of human apurinic/apyrimidinic endonuclease 1, APE1, in DNA glycosylase stimulation

Kladova, O. A., Bazlekowa-Karaban, M., Baconnais, S., Piétrement, O., Ishchenko, A. A., Matkarimov, B., Iakovlev, D. A., Vasenko, A., Fedorova, O. S., Le Cam, E., Tudek, B., Kuznetsov, N. A. & Saparbaev, M., Apr 1 2018, In : DNA Repair. 64, p. 10-25 16 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)
3 Citations (Scopus)
6 Citations (Scopus)
2017

Assessment of a linearly chirped fiber Bragg grating sensor under linear and non-linear temperature gradient

Varalda, A., Schena, E., Massaroni, C., Caponero, M. A., Polimadei, A., Tosi, D. & Saccomandi, P., 2017.

Research output: Contribution to conferencePaper

2 Citations (Scopus)

Demodulation of Tilted Fiber Bragg Grating Refractive Index Sensors with KLT

Shaimerdenova, M., Bekmurzayeva, A., Sypabekova, M. & Tosi, D., 2017.

Research output: Contribution to conferencePoster

Design of a Smartphone Plastic Optical Fiber Chemical Sensor for Hydrogen Sulfide Detection

Sultangazin, A., Kusmangaliyev, J., Aitkulov, A., Akilbekova, D., Olivero, M. & Tosi, D., Nov 1 2017, In : IEEE Sensors Journal. 17, 21, p. 6935-6940 6 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Extracellular vesicles in gastrointestinal cancer in conjunction with microbiota: On the border of Kingdoms

Barteneva, N., Baiken, Y., Fasler-Kan, E., Alibek, K., Wang, S., Maltsev, N., Ponomarev, E., Sautbayeva, Z., Kauanova, S., Moore, A. & Beglinger, C., 2017, In : Biochimica et Biophysica Acta - Reviews on Cancer. 1868, p. 372-393 22 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Interrogation of coarsely sampled Tilted Fiber Bragg Grating (TFBG) sensors with KLT

Shaimerdenova, M., Bekmurzayeva, A., Sypabekova, M. & Tosi, D., Dec 2017, In : Optics Express. 25, 26, p. 33487-33496 10 p.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
17 Downloads (Pure)

IOI host guidelines: General aspects

Matkarimov, B. T., Lee, G. C., Phillipps, M. & Schrijvers, E., Jan 1 2017, In : Olympiads in Informatics. 11, p. 175-192 18 p.

Research output: Contribution to journalArticle

Linearly chirped fiber Bragg grating response to thermal gradient: from bench tests to the real-time assessment during in vivo laser ablations of biological tissue

Saccomandi, P., Korganbayev, S., Varalda, A., Gassino, R., Tosi, D., Massaroni, C., Caponero, M. A., Pop, R., Perrone, G., Diana, M., Vallan, A., Costamagna, G., Marescaux, J. & Schena, E., Sep 2017, In : Journal of Biomedical Optics. 22, 9, p. 1-9 9 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Patient specific in situ 3D printing

Akilbekova, D. & Mektepbayeva, D., Apr 19 2017, 3D Printing in Medicine. Elsevier, p. 91-113 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Review and Analysis of Peak Tracking Techniques for Fiber Bragg Grating Sensors

Tosi, D., Oct 2017, In : Sensors. 17, 10, 35 p.

Research output: Contribution to journalArticle

Open Access
55 Citations (Scopus)

Selection, characterization, and application of DNA aptamers for detection of Mycobacterium tuberculosis secreted protein MPT64

Sypabekova, M., Bekmurzayeva, A., Wang, R., Li, Y., Nogues, C. & Kanayeva, D., May 1 2017, In : Tuberculosis. 104, p. 70-78 9 p.

Research output: Contribution to journalArticle

31 Citations (Scopus)

Thermal Gradient Estimation with Fiber-Optic Chirped FBG Sensors: Experiments in Biomedical Applications

Korganbayev, S., Orazayev, Y., Sovetov, S., Bazyl, A., Schena, E., Massaroni, C., Gassino, R., Vallan, A., Perrone, G. & Tosi, D., 2017.

Research output: Contribution to conferencePoster

2 Citations (Scopus)
2016

Analysis of nucleocytoplasmic protein shuttling by imaging flow cytometry

Fasler-Kan, E., Baiken, Y., Vorobjev, I. A. & Barteneva, N. S., 2016, In : Methods in molecular biology (Clifton, N.J.). 1389, p. 127-137 11 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Fiber Bragg grating sensors for spatially resolved measurements in ex-vivo pancreatic laser ablation

Tosi, D., Adilzhan, A., Aliakhmet, K., Saccomandi, P., Schena, E., Silvestri, S., Duraibabu, D. B., Poeggel, S., Leen, G. & Lewis, E., Aug 4 2016, 2016 IEEE International Symposium on Medical Measurements and Applications, MeMeA 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7533806

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Poly(ADP-ribose) polymerases covalently modify strand break termini in DNA fragments in vitro

Talhaoui, I., Lebedeva, N. A., Zarkovic, G., Saint-Pierre, C., Kutuzov, M. M., Sukhanova, M. V., Matkarimov, B. T., Gasparutto, D., Saparbaev, M. K., Lavrik, O. I. & Ishchenko, A. A., Nov 2 2016, In : Nucleic Acids Research. 44, 19, p. 9279-9295 17 p.

Research output: Contribution to journalArticle

49 Citations (Scopus)

Simultaneous Detection of Multiple Fiber-Optic Fabry-Perot Interferometry Sensors with Cepstrum-Division Multiplexing

Tosi, D., Aug 1 2016, In : Journal of Lightwave Technology. 34, 15, p. 3622-3627 6 p., 7482655.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Structural comparison of AP endonucleases from the exonuclease III family reveals new amino acid residues in human AP endonuclease 1 that are involved in incision of damaged DNA

Redrejo-Rodríguez, M., Vigouroux, A., Mursalimov, A., Grin, I., Alili, D., Koshenov, Z., Akishev, Z., Maksimenko, A., Bissenbaev, A. K., Matkarimov, B. T., Saparbaev, M., Ishchenko, A. A. & Moréra, S., Sep 1 2016, In : Biochimie. 128-129, p. 20-33 14 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Towards inline spatially resolved temperature sensing in thermal ablation with chirped fiber Bragg grating

Tosi, D., Korganbayev, S., Zhakin, N., Gassino, R., Perrone, G. & Vallan, A., Aug 4 2016, 2016 IEEE International Symposium on Medical Measurements and Applications, MeMeA 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7533777

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Citations (Scopus)
2015

Inclusion of the most important multi-particle interactions in the amber force field and application of the revised force field to molecular dynamics calculations

Balabaev, N. K., Garbuzinskiy, S. A., Galzitskaya, O. V., Glyakina, A. V., Matkarimov, B. T. & Finkelstein, A. V., Jan 1 2015, In : Mathematical Biology and Bioinformatics. 10, 2, p. 427-435 9 p.

Research output: Contribution to journalArticle

Oxidatively generated guanine(C8)-Thymine(N3) intrastrand cross-links in double-stranded DNA are repaired by base excision repair pathways

Talhaoui, I., Shafirovich, V., Liu, Z., Saint-Pierre, C., Akishev, Z., Matkarimov, B. T., Gasparutto, D., Geacintov, N. E. & Saparbaev, M., Jun 5 2015, In : Journal of Biological Chemistry. 290, 23, p. 14610-14617 8 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)
2014

Disruption of Bcl-2 and Bcl-xL by viral proteins as a possible cause of cancer

Alibek, K., Irving, S., Sautbayeva, Z., Kakpenova, A., Bekmurzayeva, A., Baiken, Y., Imangali, N., Shaimerdenova, M., Mektepbayeva, D., Balabiyev, A. & Chinybayeva, A., Dec 1 2014, In : Infectious Agents and Cancer. 9, 1, 44.

Research output: Contribution to journalReview article

15 Citations (Scopus)

Fiber-optic chirped FBG for distributed thermal monitoring of ex-vivo radiofrequency ablation of liver

Tosi, D., Macchi, E. G., Gallati, M., Braschi, G., Cigada, A., Rossi, S., Leen, G. & Lewis, E., Jun 1 2014, In : Biomedical Optics Express. 5, 6, p. 1799-1811 13 p., A1799.

Research output: Contribution to journalArticle

60 Citations (Scopus)

Implication of human herpesviruses in oncogenesis through immune evasion and supression

Alibek, K., Baiken, Y., Kakpenova, A., Mussabekova, A., Zhussupbekova, S., Akan, M. & Sultankulov, B., Jan 20 2014, In : Infectious Agents and Cancer. 9, 1, 3.

Research output: Contribution to journalReview article

29 Citations (Scopus)

Innovative fibre probe for laser ablation of tumour cells

Liu, Y., Gassino, R., Yu, H., Braglia, A., Vallan, A., Tosi, D., Konstantaki, M., Pissadakis, S. & Perrone, G., Jul 21 2014, European Conference on Lasers and Electro-Optics, CLEO 2015. OSA - The Optical Society

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Using genetic algorithm and single-phase multilevel DC/AC converter for the fuel cells supporting system

Ten, V., Matkarimov, B. & Isembergenov, N., Dec 9 2014, 16th International Power Electronics and Motion Control Conference and Exposition, PEMC 2014. Institute of Electrical and Electronics Engineers Inc., p. 600-603 4 p. 6980560. (16th International Power Electronics and Motion Control Conference and Exposition, PEMC 2014).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)
2013

Assembling the Kazakh language corpus

Makhambetov, O., Makazhanov, A., Yessenbayev, Z., Matkarimov, B., Sabyrgaliyev, I. & Sharafudinov, A., Jan 1 2013, EMNLP 2013 - 2013 Conference on Empirical Methods in Natural Language Processing, Proceedings of the Conference. Association for Computational Linguistics (ACL), p. 1022-1031 10 p. (EMNLP 2013 - 2013 Conference on Empirical Methods in Natural Language Processing, Proceedings of the Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

14 Citations (Scopus)

Detection of tuberculosis using biosensors: Recent progress and future trends

Kanayeva, D., Bekniyazov, I. & Ashikbayeva, Z., Jul 24 2013, Sensors and Transducers, 149, 2, p. 166-173 8 p.

Research output: Contribution to specialist publicationArticle

3 Citations (Scopus)

International olympiads in informatics in Kazakhstan

Iglikov, A., Gamezardashvili, Z. & Matkarimov, B., Jan 1 2013, Olympiads in Informatics - Selected Papers of the International Conference Joint with the 25th International Olympiad in Informatics, IOI 2013. Vilnius University, p. 153-162 10 p. (Olympiads in Informatics; vol. 7).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Role of infectious agents in the carcinogenesis of brain and head and neck cancers

Alibek, K., Kakpenova, A. & Baiken, Y., Feb 5 2013, In : Infectious Agents and Cancer. 8, 1, 7.

Research output: Contribution to journalReview article

57 Citations (Scopus)

Role of viruses in the development of breast cancer

Alibek, K., Kakpenova, A., Mussabekova, A., Sypabekova, M. & Karatayeva, N., Sep 4 2013, In : Infectious Agents and Cancer. 8, 1, 32.

Research output: Contribution to journalArticle

33 Citations (Scopus)