Biosensors and Bionstruments Laboratory

Research Output 2014 2019

2019

An aptasensor for the detection of Mycobacterium tuberculosis secreted immunogenic protein MPT64 in clinical samples towards tuberculosis detection

Sypabekova, M., Dukenbayev, K., Tsepke, A., Akisheva, A., Oralbayev, N. & Kanayeva, D., Dec 1 2019, In : Scientific Reports. 9, 1, 16273.

Research output: Contribution to journalArticle

Open Access
Mycobacterium tuberculosis
Electrodes
Tuberculosis
Dielectric Spectroscopy
Proteins
1 Citation (Scopus)

CTHRC1: A New Candidate Biomarker for Improved Rheumatoid Arthritis Diagnosis

Myngbay, A., Bexeitov, Y., Adilbayeva, A., Assylbekov, Z., Yevstratenko BP, Aitzhanova RM, Vyacheslav A. Adarichev, Matkarimov, B. & Kunz, J., Jun 12 2019, In : Frontiers in Immunology. 10, JUN, p. 1353 1353.

Research output: Contribution to journalArticle

Open Access
Rheumatoid Arthritis
Collagen
Biomarkers
Reactive Arthritis
Osteoarthritis

Functionalized etched tilted fiber Bragg grating aptasensor for label-free protein detection

Sypabekova, M., Korganbayev, S., González-Vila, Á., Caucheteur, C., Shaimerdenova, M., Ayupova, T., Bekmurzayeva, A., Vangelista, L. & Tosi, D., Dec 15 2019, In : Biosensors and Bioelectronics . 146, 111765.

Research output: Contribution to journalArticle

Fiber Bragg gratings
Thrombin
Labels
Hydrofluoric Acid
Proteins

Ile351, Leu355 and Ile461 residues are essential for catalytic activity of bovine cytochrome P450scc (CYP11A1)

Glyakina, A. V., Strizhov, N. I., Karpov, M. V., Dovidchenko, N. V., Matkarimov, B., Isaeva, L. V., Efimova, V. S., Rubtsov, M. A., Novikova, L. A., Donova, M. V. & Galzitskaya, O. V., Mar 1 2019, In : Steroids. p. 80-90 11 p.

Research output: Contribution to journalArticle

Cholesterol Side-Chain Cleavage Enzyme
Catalyst activity
Cholesterol
Sterols
Enzymes

Mechanism of stimulation of DNA binding of the transcription factors by human apurinic/apyrimidinic endonuclease 1, APE1

Bazlekowa-Karaban, M., Prorok, P., Baconnais, S., Taipakova, S., Akishev, Z., Zembrzuska, D., Popov, A. V., Endutkin, A. V., Groisman, R., Ishchenko, A. A., Matkarimov, B., Bissenbaev, A., Le Cam, E., Zharkov, D. O., Tudek, B. & Saparbaev, M., Oct 1 2019, In : DNA Repair. 82, 102698.

Research output: Contribution to journalArticle

DNA-(Apurinic or Apyrimidinic Site) Lyase
Endonucleases
Transcription Factors
DNA
Oxidation-Reduction

Refractive Index Sensor by Interrogation of Etched MgO Nanoparticle-Doped Optical Fiber Signature

Korganbayev, S., Shaimerdenova, M., Ayupova, T., Sypabekova, M., Bekmurzayeva, A., Blanc, W., Molardi, C. & Tosi, D., Aug 1 2019, In : IEEE Photonics Technology Letters. 31, 15, p. 1253-1256 4 p., 8747358.

Research output: Contribution to journalArticle

interrogation
Optical fibers
Refractive index
optical fibers
signatures

АПТАМЕРЫ ДЛЯ ОПРЕДЕЛЕНИЯ БАКТЕРИАЛЬНОЙ КЛЕТКИ MYCOBACTERIUM TUBERCULOSIS НА ОСНОВЕ МРТ64 СЕКРЕТИРУЕМОГО БЕЛКА, КОМПОЗИЦИЯ СОДЕРЖАЩАЯ ДНК АПТАМЕР И СПОСОБ ДЕТЕКТИРОВАНИЯ МИКОБАКТЕРИЙ В КЛИНИЧЕСКОМ ОБРАЗЦЕ

Translated title of the contribution: Aptamers for determining bacterial cell Mycobacterium tuberculosis based on secreted protein MPT64, composition containing DNA aptamer and method of detecting mycobacteria in a clinical sampleKanayeva, D., Sypabekova, M., Bekmurzayeva, A. & Li, Y., May 24 2019, IPC No. C12P 19/34 (2006.01), C12Q 1/00 (2006.01), Ministry of Justice of the Republic of Kazakhstan, Patent No. 33639, Oct 30 2017, Priority date Jan 21 2020

Research output: Patent

2018
1 Citation (Scopus)

Aberrant repair initiated by the adenine-DNA glycosylase does not play a role in UV-induced mutagenesis in Escherichia coli

Zutterling, C., Mursalimov, A., Talhaoui, I., Koshenov, Z., Akishev, Z., Bissenbaev, A. K., Mazon, G., Geacintov, N. E., Gasparutto, D., Groisman, R., Zharkov, D. O., Matkarimov, B. & Saparbaev, M., Jan 1 2018, In : PeerJ. 2018, 12, e6029.

Research output: Contribution to journalArticle

DNA Glycosylases
glycosylases
Mutagenesis
Adenine
adenine
23 Citations (Scopus)

Characterization of DNA ADP-ribosyltransferase activities of PARP2 and PARP3: New insights into DNA ADP-ribosylation

Zarkovic, G., Belousova, E. A., Talhaoui, I., Saint-Pierre, C., Kutuzov, M. M., Matkarimov, B., Biard, D., Gasparutto, D., Lavrik, O. I. & Ishchenko, A. A., Jan 1 2018, In : Nucleic Acids Research. 46, 5, p. 2417-2431 15 p.

Research output: Contribution to journalArticle

ADP Ribose Transferases
Adenosine Diphosphate
Poly(ADP-ribose) Polymerases
DNA
Adenosine Diphosphate Ribose

Design and Simulation of a New Coaxial Probe for Near Field Scanning Optical Microscopy

Shomanov, A. S., Yessenbayev, Z. A., Matkarimov, B. & Beketayev, K. B., Jan 1 2018, In : Materials Today: Proceedings. 5, 11, p. 22741-22748 8 p.

Research output: Contribution to journalConference article

Near field scanning optical microscopy
Photonics
Cones
Photonic devices
Integrated circuits
15 Citations (Scopus)
33 Downloads (Pure)

Detection of thermal gradients through fiber-optic Chirped Fiber Bragg Grating (CFBG): Medical thermal ablation scenario

Korganbayev, S., Orazayev, Y., Sovetov, S., Bazyl, A., Schena, E., Massaroni, C., Gassino, R., Vallan, A., Perrone, G., Saccomandi, P., Caponero, M. A., Iadicicco, A. & Tosi, D., 2018, In : Optical Fiber Technology. 41, p. 48-55 8 p.

Research output: Contribution to journalArticle

Open Access
File
Fiber Bragg gratings
Ablation
Thermal gradients
Fiber optics
Demodulation

Detection of tilted fiber bragg grating fiber-optic sensors with short-term KLT: Towards low-cost biosensors

Bekmurzayeva, A., Shaimerdenova, M., Abukhanov, Y., Sypabekova, M. & Tosi, D., Jan 1 2018, In : Proceedings of IEEE Sensors. 2018-January, 8630292.

Research output: Contribution to journalConference article

Fiber optic sensors
Fiber Bragg gratings
Biosensors
Refractive index
Costs

Detection of tilted fiber Bragg grating fiber-optic sensors with short-term KLT: Towards low-cost biosensors

Shaimerdenova, M., Bekmurzayeva, A., Sypabekova, M., Abukhanov, Y. & Tosi, D., Jan 1 2018, Optics in Health Care and Biomedical Optics VIII. Gu, Y., Luo, Q., Li, X., Tang, Y. & Zhu, D. (eds.). SPIE, Vol. 10820. 108203A

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fiber Optic Sensor
Biosensor
Fiber optic sensors
Fiber Grating
Fiber Bragg gratings

Fabrication and Interrogation of Refractive Index Biosensors Based on Etched Fiber Bragg Grating (EFBG)

Bekmurzayeva, A., Shaimerdenova, M. & Tosi, D., Oct 26 2018, 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-July. p. 4289-4292 4 p. 8513240

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Refractometry
Biosensing Techniques
Fiber Bragg gratings
Biosensors
Etching
3 Citations (Scopus)

Fiber optic refractive index sensors through spectral detection of Rayleigh backscattering in a chemically etched MgO-based nanoparticle-doped fiber

Sypabekova, M., Korganbayev, S., Blanc, W., Ayupova, T., Bekmurzayeva, A., Shaimerdenova, M., Dukenbayev, K., Molardi, C. & Tosi, D., Dec 15 2018, In : Optics Letters. 43, 24, p. 5945-5948 4 p.

Research output: Contribution to journalArticle

fiber optics
backscattering
refractivity
nanoparticles
fibers
10 Citations (Scopus)

Synthetic coal fly ash-derived zeolites doped with silver nanoparticles for mercury (II) removal from water

Tauanov, Z., Tsakiridis, P. E., Mikhalovsky, S. V. & Inglezakis, V. J., Jul 21 2018, In : Journal of Environmental Management. 224, p. 164-171 8 p.

Research output: Contribution to journalArticle

Zeolites
Fly ash
fly ash
silver
Silver
4 Citations (Scopus)

The role of the N-terminal domain of human apurinic/apyrimidinic endonuclease 1, APE1, in DNA glycosylase stimulation

Kladova, O. A., Bazlekowa-Karaban, M., Baconnais, S., Piétrement, O., Ishchenko, A. A., Matkarimov, B., Iakovlev, D. A., Vasenko, A., Fedorova, O. S., Le Cam, E., Tudek, B., Kuznetsov, N. A. & Saparbaev, M., Apr 1 2018, In : DNA Repair. 64, p. 10-25 16 p.

Research output: Contribution to journalArticle

DNA-(Apurinic or Apyrimidinic Site) Lyase
DNA Glycosylases
Endonucleases
DNA
DNA Repair

Wavelet-Based Demodulation of Multimode Etched Fiber Bragg Grating Refractive Index Sensor

Ayupova, T., Sypabekova, M., Molardi, C., Bekmurzayeva, A., Shaimerdenova, M., Dukenbayev, K. & Tosi, D., Dec 22 2018, In : Sensors (Basel, Switzerland). 19, 1

Research output: Contribution to journalArticle

Refractometry
Multimode fibers
demodulation
Fiber Bragg gratings
Demodulation
2 Citations (Scopus)
Numismatics
Electromagnetic Fields
Mass Media
DNA Breaks
Therapeutic Uses
2017
2 Citations (Scopus)

Assessment of a linearly chirped fiber Bragg grating sensor under linear and non-linear temperature gradient

Varalda, A., Schena, E., Massaroni, C., Caponero, M. A., Polimadei, A., Tosi, D. & Saccomandi, P., 2017.

Research output: Contribution to conferencePaper

Demodulation of Tilted Fiber Bragg Grating Refractive Index Sensors with KLT

Shaimerdenova, M., Bekmurzayeva, A., Sypabekova, M. & Tosi, D., 2017.

Research output: Contribution to conferencePoster

5 Citations (Scopus)

Design of a Smartphone Plastic Optical Fiber Chemical Sensor for Hydrogen Sulfide Detection

Sultangazin, A., Kusmangaliyev, J., Aitkulov, A., Akilbekova, D., Olivero, M. & Tosi, D., Nov 1 2017, In : IEEE Sensors Journal. 17, 21, p. 6935-6940 6 p.

Research output: Contribution to journalArticle

Fiber optic chemical sensors
Plastic optical fibers
plastic fibers
hydrogen sulfide
Smartphones
12 Citations (Scopus)

Extracellular vesicles in gastrointestinal cancer in conjunction with microbiota: On the border of Kingdoms

Barteneva, N., Baiken, Y., Fasler-Kan, E., Alibek, K., Wang, S., Maltsev, N., Ponomarev, E., Sautbayeva, Z., Kauanova, S., Moore, A. & Beglinger, C., 2017, In : Biochimica et Biophysica Acta - Reviews on Cancer. 1868, p. 372-393 22 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)
11 Downloads (Pure)

Interrogation of coarsely sampled Tilted Fiber Bragg Grating (TFBG) sensors with KLT

Shaimerdenova, M., Bekmurzayeva, A., Sypabekova, M. & Tosi, D., Dec 2017, In : Optics Express. 25, 26, p. 33487-33496 10 p.

Research output: Contribution to journalArticle

Open Access
File
interrogation
Bragg gratings
refractivity
fibers
sensors

IOI host guidelines: General aspects

Matkarimov, B. T., Lee, G. C., Phillipps, M. & Schrijvers, E., Jan 1 2017, In : Olympiads in Informatics. 11, p. 175-192 18 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Linearly chirped fiber Bragg grating response to thermal gradient: from bench tests to the real-time assessment during in vivo laser ablations of biological tissue

Saccomandi, P., Korganbayev, S., Varalda, A., Gassino, R., Tosi, D., Massaroni, C., Caponero, M. A., Pop, R., Perrone, G., Diana, M., Vallan, A., Costamagna, G., Marescaux, J. & Schena, E., Sep 2017, In : Journal of Biomedical Optics. 22, 9, p. 1-9 9 p.

Research output: Contribution to journalArticle

Laser ablation
Fiber Bragg gratings
Thermal gradients
Bragg gratings
seats

Patient specific in situ 3D printing

Akilbekova, D. & Mektepbayeva, D., Apr 19 2017, 3D Printing in Medicine. Elsevier, p. 91-113 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Printing
Medical applications
3D printers
Bioprinting
Technology
41 Citations (Scopus)

Review and Analysis of Peak Tracking Techniques for Fiber Bragg Grating Sensors

Tosi, D., Oct 2017, In : Sensors. 17, 10, 35 p.

Research output: Contribution to journalArticle

Open Access
Fiber Bragg gratings
Bragg gratings
fibers
sensors
Sensors
21 Citations (Scopus)

Selection, characterization, and application of DNA aptamers for detection of Mycobacterium tuberculosis secreted protein MPT64

Sypabekova, M., Bekmurzayeva, A., Wang, R., Li, Y., Nogues, C. & Kanayeva, D., May 1 2017, In : Tuberculosis. 104, p. 70-78 9 p.

Research output: Contribution to journalArticle

Nucleotide Aptamers
SELEX Aptamer Technique
Mycobacterium tuberculosis
Oligonucleotides
Proteins
1 Citation (Scopus)

Thermal Gradient Estimation with Fiber-Optic Chirped FBG Sensors: Experiments in Biomedical Applications

Korganbayev, S., Orazayev, Y., Sovetov, S., Bazyl, A., Schena, E., Massaroni, C., Gassino, R., Vallan, A., Perrone, G. & Tosi, D., 2017.

Research output: Contribution to conferencePoster

2016
4 Citations (Scopus)

Analysis of nucleocytoplasmic protein shuttling by imaging flow cytometry

Fasler-Kan, E., Baiken, Y., Vorobjev, I. A. & Barteneva, N. S., 2016, In : Methods in molecular biology (Clifton, N.J.). 1389, p. 127-137 11 p.

Research output: Contribution to journalArticle

Flow Cytometry
Cytoplasm
Proteins
NF-kappa B
Protein Transport

Fiber Bragg grating sensors for spatially resolved measurements in ex-vivo pancreatic laser ablation

Tosi, D., Adilzhan, A., Aliakhmet, K., Saccomandi, P., Schena, E., Silvestri, S., Duraibabu, D. B., Poeggel, S., Leen, G. & Lewis, E., Aug 4 2016, 2016 IEEE International Symposium on Medical Measurements and Applications, MeMeA 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7533806

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Laser ablation
Fiber Bragg gratings
Bragg gratings
laser ablation
fibers
36 Citations (Scopus)

Poly(ADP-ribose) polymerases covalently modify strand break termini in DNA fragments in vitro

Talhaoui, I., Lebedeva, N. A., Zarkovic, G., Saint-Pierre, C., Kutuzov, M. M., Sukhanova, M. V., Matkarimov, B. T., Gasparutto, D., Saparbaev, M. K., Lavrik, O. I. & Ishchenko, A. A., Nov 2 2016, In : Nucleic Acids Research. 44, 19, p. 9279-9295 17 p.

Research output: Contribution to journalArticle

Poly(ADP-ribose) Polymerases
Adenosine Diphosphate Ribose
DNA
Phosphates
Adenosine Diphosphate
4 Citations (Scopus)

Simultaneous Detection of Multiple Fiber-Optic Fabry-Perot Interferometry Sensors with Cepstrum-Division Multiplexing

Tosi, D., Aug 1 2016, In : Journal of Lightwave Technology. 34, 15, p. 3622-3627 6 p., 7482655.

Research output: Contribution to journalArticle

multiplexing
division
fiber optics
interferometry
sensors
7 Citations (Scopus)

Structural comparison of AP endonucleases from the exonuclease III family reveals new amino acid residues in human AP endonuclease 1 that are involved in incision of damaged DNA

Redrejo-Rodríguez, M., Vigouroux, A., Mursalimov, A., Grin, I., Alili, D., Koshenov, Z., Akishev, Z., Maksimenko, A., Bissenbaev, A. K., Matkarimov, B. T., Saparbaev, M., Ishchenko, A. A. & Moréra, S., Sep 1 2016, In : Biochimie. 128-129, p. 20-33 14 p.

Research output: Contribution to journalArticle

Endonucleases
Repair
Nucleotides
Amino Acids
DNA
7 Citations (Scopus)

Towards inline spatially resolved temperature sensing in thermal ablation with chirped fiber Bragg grating

Tosi, D., Korganbayev, S., Zhakin, N., Gassino, R., Perrone, G. & Vallan, A., Aug 4 2016, 2016 IEEE International Symposium on Medical Measurements and Applications, MeMeA 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7533777

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fiber Bragg gratings
Ablation
Bragg gratings
ablation
fibers
2014
3 Citations (Scopus)

Fiber-optic technologies for advanced thermo-therapy applied ex vivo to liver tumors

Tosi, D., Perrone, G., Vallan, A., Braglia, A., Liu, Y., Macchi, E. G., Braschi, G., Gallati, M., Cigada, A., Poeggel, S., Duraibabu, D. B., Leen, G. & Lewis, E., Jul 21 2014, European Conference on Biomedical Optics, ECBO 2015. OSA - The Optical Society

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Ablation
Liver
Fiber optics
Tumors
Fiber optic sensors

Innovative fibre probe for laser ablation of tumour cells

Liu, Y., Gassino, R., Yu, H., Braglia, A., Vallan, A., Tosi, D., Konstantaki, M., Pissadakis, S. & Perrone, G., Jul 21 2014, European Conference on Lasers and Electro-Optics, CLEO 2015. OSA - The Optical Society

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Laser ablation
Tumors
Cells
Fibers