Biosensors and Bionstruments Laboratory

Research Output

Article

Aberrant repair initiated by the adenine-DNA glycosylase does not play a role in UV-induced mutagenesis in Escherichia coli

Zutterling, C., Mursalimov, A., Talhaoui, I., Koshenov, Z., Akishev, Z., Bissenbaev, A. K., Mazon, G., Geacintov, N. E., Gasparutto, D., Groisman, R., Zharkov, D. O., Matkarimov, B. & Saparbaev, M., 2018, In : PeerJ. 2018, 12, e6029.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Analysis of nucleocytoplasmic protein shuttling by imaging flow cytometry

Fasler-Kan, E., Baiken, Y., Vorobjev, I. A. & Barteneva, N. S., 2016, In : Methods in molecular biology (Clifton, N.J.). 1389, p. 127-137 11 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
Open Access

Characterization of DNA ADP-ribosyltransferase activities of PARP2 and PARP3: New insights into DNA ADP-ribosylation

Zarkovic, G., Belousova, E. A., Talhaoui, I., Saint-Pierre, C., Kutuzov, M. M., Matkarimov, B. T., Biard, D., Gasparutto, D., Lavrik, O. I. & Ishchenko, A. A., Jan 1 2018, In : Nucleic Acids Research. 46, 5, p. 2417-2431 15 p.

Research output: Contribution to journalArticle

36 Citations (Scopus)

CTHRC1: A New Candidate Biomarker for Improved Rheumatoid Arthritis Diagnosis

Myngbay, A., Bexeitov, Y., Adilbayeva, A., Assylbekov, Z., Yevstratenko BP, Aitzhanova RM, Vyacheslav A. Adarichev, Matkarimov, B. & Kunz, J., Jun 12 2019, In : Frontiers in Immunology. 10, JUN, p. 1353 1353.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Design of a Smartphone Plastic Optical Fiber Chemical Sensor for Hydrogen Sulfide Detection

Sultangazin, A., Kusmangaliyev, J., Aitkulov, A., Akilbekova, D., Olivero, M. & Tosi, D., Nov 1 2017, In : IEEE Sensors Journal. 17, 21, p. 6935-6940 6 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Detection of thermal gradients through fiber-optic Chirped Fiber Bragg Grating (CFBG): Medical thermal ablation scenario

Korganbayev, S., Orazayev, Y., Sovetov, S., Bazyl, A., Schena, E., Massaroni, C., Gassino, R., Vallan, A., Perrone, G., Saccomandi, P., Caponero, M. A., Iadicicco, A. & Tosi, D., 2018, In : Optical Fiber Technology. 41, p. 48-55 8 p.

Research output: Contribution to journalArticle

Open Access
File
20 Citations (Scopus)
44 Downloads (Pure)

Detection of tuberculosis using biosensors: Recent progress and future trends

Kanayeva, D., Bekniyazov, I. & Ashikbayeva, Z., Jul 24 2013, Sensors and Transducers, 149, 2, p. 166-173 8 p.

Research output: Contribution to specialist publicationArticle

3 Citations (Scopus)

Extracellular vesicles in gastrointestinal cancer in conjunction with microbiota: On the border of Kingdoms

Barteneva, N., Baiken, Y., Fasler-Kan, E., Alibek, K., Wang, S., Maltsev, N., Ponomarev, E., Sautbayeva, Z., Kauanova, S., Moore, A. & Beglinger, C., 2017, In : Biochimica et Biophysica Acta - Reviews on Cancer. 1868, p. 372-393 22 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Fiber-optic chirped FBG for distributed thermal monitoring of ex-vivo radiofrequency ablation of liver

Tosi, D., Macchi, E. G., Gallati, M., Braschi, G., Cigada, A., Rossi, S., Leen, G. & Lewis, E., Jun 1 2014, In : Biomedical Optics Express. 5, 6, p. 1799-1811 13 p., A1799.

Research output: Contribution to journalArticle

61 Citations (Scopus)

Fiber-optic combined FPI/FBG sensors for monitoring of radiofrequency thermal ablation of liver tumors: Ex vivo experiments

Tosi, D., Macchi, E. G., Braschi, G., Cigada, A., Gallati, M., Rossi, S., Poeggel, S., Leen, G. & Lewis, E., Apr 1 2014, In : Applied Optics. 10, p. 2136-2144 9 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Fiber Optic Refractive Index Distributed Multi-Sensors by Scattering-Level Multiplexing with MgO Nanoparticle-Doped Fibers

Ayupova, T., Tosi, D., Shaimerdenova, M., Korganbayev, S., Sypabekova, M., Bekmurzayeva, A., Blanc, W., Sales, S., Guo, T. & Molardi, C., Mar 1 2020, In : IEEE Sensors Journal. 20, 5, p. 2504-2510 7 p., 8902068.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Fiber optic refractive index sensors through spectral detection of Rayleigh backscattering in a chemically etched MgO-based nanoparticle-doped fiber

Sypabekova, M., Korganbayev, S., Blanc, W., Ayupova, T., Bekmurzayeva, A., Shaimerdenova, M., Dukenbayev, K., Molardi, C. & Tosi, D., Dec 15 2018, In : Optics Letters. 43, 24, p. 5945-5948 4 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Functionalized etched tilted fiber Bragg grating aptasensor for label-free protein detection

Sypabekova, M., Korganbayev, S., González-Vila, Á., Caucheteur, C., Shaimerdenova, M., Ayupova, T., Bekmurzayeva, A., Vangelista, L. & Tosi, D., Dec 15 2019, In : Biosensors and Bioelectronics . 146, 111765.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Ile351, Leu355 and Ile461 residues are essential for catalytic activity of bovine cytochrome P450scc (CYP11A1)

Glyakina, A. V., Strizhov, N. I., Karpov, M. V., Dovidchenko, N. V., Matkarimov, B., Isaeva, L. V., Efimova, V. S., Rubtsov, M. A., Novikova, L. A., Donova, M. V. & Galzitskaya, O. V., Mar 1 2019, In : Steroids. p. 80-90 11 p.

Research output: Contribution to journalArticle

Inclusion of the most important multi-particle interactions in the amber force field and application of the revised force field to molecular dynamics calculations

Balabaev, N. K., Garbuzinskiy, S. A., Galzitskaya, O. V., Glyakina, A. V., Matkarimov, B. T. & Finkelstein, A. V., Jan 1 2015, In : Mathematical Biology and Bioinformatics. 10, 2, p. 427-435 9 p.

Research output: Contribution to journalArticle

Interrogation of coarsely sampled Tilted Fiber Bragg Grating (TFBG) sensors with KLT

Shaimerdenova, M., Bekmurzayeva, A., Sypabekova, M. & Tosi, D., Dec 2017, In : Optics Express. 25, 26, p. 33487-33496 10 p.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
17 Downloads (Pure)

Inverse spectral transform for the Ishimori equation: I. Initial value problem

Konopelchenko, B. G. & Matkarimov, B. T., Jan 1 1990, In : Journal of Mathematical Physics. 31, 11, p. 2737-2746 10 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

IOI host guidelines: General aspects

Matkarimov, B. T., Lee, G. C., Phillipps, M. & Schrijvers, E., Jan 1 2017, In : Olympiads in Informatics. 11, p. 175-192 18 p.

Research output: Contribution to journalArticle

Linearly chirped fiber Bragg grating response to thermal gradient: from bench tests to the real-time assessment during in vivo laser ablations of biological tissue

Saccomandi, P., Korganbayev, S., Varalda, A., Gassino, R., Tosi, D., Massaroni, C., Caponero, M. A., Pop, R., Perrone, G., Diana, M., Vallan, A., Costamagna, G., Marescaux, J. & Schena, E., Sep 2017, In : Journal of Biomedical Optics. 22, 9, p. 1-9 9 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Mechanism of stimulation of DNA binding of the transcription factors by human apurinic/apyrimidinic endonuclease 1, APE1

Bazlekowa-Karaban, M., Prorok, P., Baconnais, S., Taipakova, S., Akishev, Z., Zembrzuska, D., Popov, A. V., Endutkin, A. V., Groisman, R., Ishchenko, A. A., Matkarimov, B., Bissenbaev, A., Le Cam, E., Zharkov, D. O., Tudek, B. & Saparbaev, M., Oct 1 2019, In : DNA Repair. 82, 102698.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Multipoint correlators of the impenetrable Bose gas

Matkarimov, B. T., Dec 1 1993, In : Journal of Physics A: General Physics. 26, 20, p. 5189-5196 8 p., 007.

Research output: Contribution to journalArticle

1 Citation (Scopus)

On the inverse scattering transform for the Ishimori equation

Konopelchenko, B. G. & Matkarimov, B. T., Feb 20 1989, In : Physics Letters A. 135, 3, p. 183-189 7 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Oxidatively generated guanine(C8)-Thymine(N3) intrastrand cross-links in double-stranded DNA are repaired by base excision repair pathways

Talhaoui, I., Shafirovich, V., Liu, Z., Saint-Pierre, C., Akishev, Z., Matkarimov, B. T., Gasparutto, D., Geacintov, N. E. & Saparbaev, M., Jun 5 2015, In : Journal of Biological Chemistry. 290, 23, p. 14610-14617 8 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Poly(ADP-ribose) polymerases covalently modify strand break termini in DNA fragments in vitro

Talhaoui, I., Lebedeva, N. A., Zarkovic, G., Saint-Pierre, C., Kutuzov, M. M., Sukhanova, M. V., Matkarimov, B. T., Gasparutto, D., Saparbaev, M. K., Lavrik, O. I. & Ishchenko, A. A., Nov 2 2016, In : Nucleic Acids Research. 44, 19, p. 9279-9295 17 p.

Research output: Contribution to journalArticle

51 Citations (Scopus)

Reflector-less nanoparticles doped optical fiber biosensor for the detection of proteins: Case thrombin

Sypabekova, M., Aitkulov, A., Blanc, W. & Tosi, D., Oct 1 2020, In : Biosensors and Bioelectronics . 165, 112365.

Research output: Contribution to journalArticle

Refractive Index Sensor by Interrogation of Etched MgO Nanoparticle-Doped Optical Fiber Signature

Korganbayev, S., Shaimerdenova, M., Ayupova, T., Sypabekova, M., Bekmurzayeva, A., Blanc, W., Molardi, C. & Tosi, D., Aug 1 2019, In : IEEE Photonics Technology Letters. 31, 15, p. 1253-1256 4 p., 8747358.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Review and Analysis of Peak Tracking Techniques for Fiber Bragg Grating Sensors

Tosi, D., Oct 2017, In : Sensors. 17, 10, 35 p.

Research output: Contribution to journalArticle

Open Access
56 Citations (Scopus)

Role of viruses in the development of breast cancer

Alibek, K., Kakpenova, A., Mussabekova, A., Sypabekova, M. & Karatayeva, N., Sep 4 2013, In : Infectious Agents and Cancer. 8, 1, 32.

Research output: Contribution to journalArticle

33 Citations (Scopus)

Selection, characterization, and application of DNA aptamers for detection of Mycobacterium tuberculosis secreted protein MPT64

Sypabekova, M., Bekmurzayeva, A., Wang, R., Li, Y., Nogues, C. & Kanayeva, D., May 1 2017, In : Tuberculosis. 104, p. 70-78 9 p.

Research output: Contribution to journalArticle

31 Citations (Scopus)

Simultaneous Detection of Multiple Fiber-Optic Fabry-Perot Interferometry Sensors with Cepstrum-Division Multiplexing

Tosi, D., Aug 1 2016, In : Journal of Lightwave Technology. 34, 15, p. 3622-3627 6 p., 7482655.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Structural comparison of AP endonucleases from the exonuclease III family reveals new amino acid residues in human AP endonuclease 1 that are involved in incision of damaged DNA

Redrejo-Rodríguez, M., Vigouroux, A., Mursalimov, A., Grin, I., Alili, D., Koshenov, Z., Akishev, Z., Maksimenko, A., Bissenbaev, A. K., Matkarimov, B. T., Saparbaev, M., Ishchenko, A. A. & Moréra, S., Sep 1 2016, In : Biochimie. 128-129, p. 20-33 14 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Synthetic coal fly ash-derived zeolites doped with silver nanoparticles for mercury (II) removal from water

Tauanov, Z., Tsakiridis, P. E., Mikhalovsky, S. V. & Inglezakis, V. J., Jul 21 2018, In : Journal of Environmental Management. 224, p. 164-171 8 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

The role of the N-terminal domain of human apurinic/apyrimidinic endonuclease 1, APE1, in DNA glycosylase stimulation

Kladova, O. A., Bazlekowa-Karaban, M., Baconnais, S., Piétrement, O., Ishchenko, A. A., Matkarimov, B., Iakovlev, D. A., Vasenko, A., Fedorova, O. S., Le Cam, E., Tudek, B., Kuznetsov, N. A. & Saparbaev, M., Apr 1 2018, In : DNA Repair. 64, p. 10-25 16 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Wavelet-Based Demodulation of Multimode Etched Fiber Bragg Grating Refractive Index Sensor

Ayupova, T., Sypabekova, M., Molardi, C., Bekmurzayeva, A., Shaimerdenova, M., Dukenbayev, K. & Tosi, D., Dec 22 2018, In : Sensors (Basel, Switzerland). 19, 1, 39.

Research output: Contribution to journalArticle

4 Citations (Scopus)
6 Citations (Scopus)
Chapter

Patient specific in situ 3D printing

Akilbekova, D. & Mektepbayeva, D., Apr 19 2017, 3D Printing in Medicine. Elsevier, p. 91-113 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)
Conference article

Design and Simulation of a New Coaxial Probe for Near Field Scanning Optical Microscopy

Shomanov, A. S., Yessenbayev, Z. A., Matkarimov, B. & Beketayev, K. B., Jan 1 2018, In : Materials Today: Proceedings. 5, 11, p. 22741-22748 8 p.

Research output: Contribution to journalConference article

Detection of tilted fiber bragg grating fiber-optic sensors with short-term KLT: Towards low-cost biosensors

Bekmurzayeva, A., Shaimerdenova, M., Abukhanov, Y., Sypabekova, M. & Tosi, D., Jan 1 2018, In : Proceedings of IEEE Sensors. 2018-January, 8630292.

Research output: Contribution to journalConference article

1 Citation (Scopus)
Conference contribution

Approach to control of the output voltage in renewable energy sources on the basis of AE-method using genetic algorithm

Ten, V., Isembergenov, N., Akhmetbekov, Y., Sarbassov, D., Iglikov, A. & Matkarimov, B., Dec 1 2012, Proceedings - 2012 11th International Conference on Machine Learning and Applications, ICMLA 2012. p. 493-497 5 p. 6406784. (Proceedings - 2012 11th International Conference on Machine Learning and Applications, ICMLA 2012; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Assembling the Kazakh language corpus

Makhambetov, O., Makazhanov, A., Yessenbayev, Z., Matkarimov, B., Sabyrgaliyev, I. & Sharafudinov, A., Jan 1 2013, EMNLP 2013 - 2013 Conference on Empirical Methods in Natural Language Processing, Proceedings of the Conference. Association for Computational Linguistics (ACL), p. 1022-1031 10 p. (EMNLP 2013 - 2013 Conference on Empirical Methods in Natural Language Processing, Proceedings of the Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

14 Citations (Scopus)

Detection of tilted fiber Bragg grating fiber-optic sensors with short-term KLT: Towards low-cost biosensors

Shaimerdenova, M., Bekmurzayeva, A., Sypabekova, M., Abukhanov, Y. & Tosi, D., Jan 1 2018, Optics in Health Care and Biomedical Optics VIII. Gu, Y., Luo, Q., Li, X., Tang, Y. & Zhu, D. (eds.). SPIE, Vol. 10820. 108203A

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fabrication and Interrogation of Refractive Index Biosensors Based on Etched Fiber Bragg Grating (EFBG)

Bekmurzayeva, A., Shaimerdenova, M. & Tosi, D., Oct 26 2018, 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2018. Institute of Electrical and Electronics Engineers Inc., Vol. 2018-July. p. 4289-4292 4 p. 8513240

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fiber Bragg grating sensors for spatially resolved measurements in ex-vivo pancreatic laser ablation

Tosi, D., Adilzhan, A., Aliakhmet, K., Saccomandi, P., Schena, E., Silvestri, S., Duraibabu, D. B., Poeggel, S., Leen, G. & Lewis, E., Aug 4 2016, 2016 IEEE International Symposium on Medical Measurements and Applications, MeMeA 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7533806

Research output: Chapter in Book/Report/Conference proceedingConference contribution

FPGA FFT implementation

Churayev, S. O. & Matkarimov, B. T., Dec 1 2010, Proceedings of IEEE East-West Design and Test Symposium, EWDTS'10. p. 183-185 3 p. 5742111. (Proceedings of IEEE East-West Design and Test Symposium, EWDTS'10).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Innovative fibre probe for laser ablation of tumour cells

Liu, Y., Gassino, R., Yu, H., Braglia, A., Vallan, A., Tosi, D., Konstantaki, M., Pissadakis, S. & Perrone, G., Jul 21 2014, European Conference on Lasers and Electro-Optics, CLEO 2015. OSA - The Optical Society

Research output: Chapter in Book/Report/Conference proceedingConference contribution

International olympiads in informatics in Kazakhstan

Iglikov, A., Gamezardashvili, Z. & Matkarimov, B., Jan 1 2013, Olympiads in Informatics - Selected Papers of the International Conference Joint with the 25th International Olympiad in Informatics, IOI 2013. Vilnius University, p. 153-162 10 p. (Olympiads in Informatics; vol. 7).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

On-chip measurements of standard-cell propagation delay

Churayev, S. O., Matkarimov, B. T. & Paltashev, T. T., Dec 1 2010, Proceedings of IEEE East-West Design and Test Symposium, EWDTS'10. p. 179-181 3 p. 5742113. (Proceedings of IEEE East-West Design and Test Symposium, EWDTS'10).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

5 Citations (Scopus)

Spatial multiplexing of refractive index distributed sensors by means of high-scattering MgO nanoparticle doped optical fiber

Shaimerdenova, M., Bekmurzayeva, A., Ayupova, T., Sypabekova, M., Korganbayev, S., Dukenbayev, R., Blanc, W., Molardi, C. & Tosi, D., Jan 1 2020, Optical Fibers and Sensors for Medical Diagnostics and Treatment Applications XX. Gannot, I. & Gannot, I. (eds.). SPIE, 112330U. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11233).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Towards inline spatially resolved temperature sensing in thermal ablation with chirped fiber Bragg grating

Tosi, D., Korganbayev, S., Zhakin, N., Gassino, R., Perrone, G. & Vallan, A., Aug 4 2016, 2016 IEEE International Symposium on Medical Measurements and Applications, MeMeA 2016 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 7533777

Research output: Chapter in Book/Report/Conference proceedingConference contribution

8 Citations (Scopus)