Biosensors and Bionstruments Laboratory

Research Output 2014 2019

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2019

CTHRC1: A New Candidate Biomarker for Improved Rheumatoid Arthritis Diagnosis

Myngbay, A., Bexeitov, Y., Adilbayeva, A., Assylbekov, Z., Yevstratenko BP, Aitzhanova RM, Vyacheslav A. Adarichev, Matkarimov, B. & Kunz, J., Jun 12 2019, In : Frontiers in Immunology. 10, JUN, p. 1353 1353.

Research output: Contribution to journalArticle

Open Access
Rheumatoid Arthritis
Collagen
Biomarkers
Reactive Arthritis
Osteoarthritis

Ile351, Leu355 and Ile461 residues are essential for catalytic activity of bovine cytochrome P450scc (CYP11A1)

Glyakina, A. V., Strizhov, N. I., Karpov, M. V., Dovidchenko, N. V., Matkarimov, B., Isaeva, L. V., Efimova, V. S., Rubtsov, M. A., Novikova, L. A., Donova, M. V. & Galzitskaya, O. V., Mar 1 2019, In : Steroids. p. 80-90 11 p.

Research output: Contribution to journalArticle

Cholesterol Side-Chain Cleavage Enzyme
Catalyst activity
Cholesterol
Sterols
Enzymes

Mechanism of stimulation of DNA binding of the transcription factors by human apurinic/apyrimidinic endonuclease 1, APE1

Bazlekowa-Karaban, M., Prorok, P., Baconnais, S., Taipakova, S., Akishev, Z., Zembrzuska, D., Popov, A. V., Endutkin, A. V., Groisman, R., Ishchenko, A. A., Matkarimov, B., Bissenbaev, A., Le Cam, E., Zharkov, D. O., Tudek, B. & Saparbaev, M., Oct 1 2019, In : DNA Repair. 82, 102698.

Research output: Contribution to journalArticle

DNA-(Apurinic or Apyrimidinic Site) Lyase
Endonucleases
Transcription Factors
DNA
Oxidation-Reduction

Refractive Index Sensor by Interrogation of Etched MgO Nanoparticle-Doped Optical Fiber Signature

Korganbayev, S., Shaimerdenova, M., Ayupova, T., Sypabekova, M., Bekmurzayeva, A., Blanc, W., Molardi, C. & Tosi, D., Aug 1 2019, In : IEEE Photonics Technology Letters. 31, 15, p. 1253-1256 4 p., 8747358.

Research output: Contribution to journalArticle

interrogation
Optical fibers
Refractive index
optical fibers
signatures
2018
1 Citation (Scopus)

Aberrant repair initiated by the adenine-DNA glycosylase does not play a role in UV-induced mutagenesis in Escherichia coli

Zutterling, C., Mursalimov, A., Talhaoui, I., Koshenov, Z., Akishev, Z., Bissenbaev, A. K., Mazon, G., Geacintov, N. E., Gasparutto, D., Groisman, R., Zharkov, D. O., Matkarimov, B. & Saparbaev, M., Jan 1 2018, In : PeerJ. 2018, 12, e6029.

Research output: Contribution to journalArticle

DNA Glycosylases
glycosylases
Mutagenesis
Adenine
adenine
22 Citations (Scopus)

Characterization of DNA ADP-ribosyltransferase activities of PARP2 and PARP3: New insights into DNA ADP-ribosylation

Zarkovic, G., Belousova, E. A., Talhaoui, I., Saint-Pierre, C., Kutuzov, M. M., Matkarimov, B., Biard, D., Gasparutto, D., Lavrik, O. I. & Ishchenko, A. A., Jan 1 2018, In : Nucleic Acids Research. 46, 5, p. 2417-2431 15 p.

Research output: Contribution to journalArticle

ADP Ribose Transferases
Adenosine Diphosphate
Poly(ADP-ribose) Polymerases
DNA
Adenosine Diphosphate Ribose
14 Citations (Scopus)
31 Downloads (Pure)

Detection of thermal gradients through fiber-optic Chirped Fiber Bragg Grating (CFBG): Medical thermal ablation scenario

Korganbayev, S., Orazayev, Y., Sovetov, S., Bazyl, A., Schena, E., Massaroni, C., Gassino, R., Vallan, A., Perrone, G., Saccomandi, P., Caponero, M. A., Iadicicco, A. & Tosi, D., 2018, In : Optical Fiber Technology. 41, p. 48-55 8 p.

Research output: Contribution to journalArticle

Open Access
File
Fiber Bragg gratings
Ablation
Thermal gradients
Fiber optics
Demodulation
2 Citations (Scopus)

Fiber optic refractive index sensors through spectral detection of Rayleigh backscattering in a chemically etched MgO-based nanoparticle-doped fiber

Sypabekova, M., Korganbayev, S., Blanc, W., Ayupova, T., Bekmurzayeva, A., Shaimerdenova, M., Dukenbayev, K., Molardi, C. & Tosi, D., Dec 15 2018, In : Optics Letters. 43, 24, p. 5945-5948 4 p.

Research output: Contribution to journalArticle

fiber optics
backscattering
refractivity
nanoparticles
fibers
8 Citations (Scopus)

Synthetic coal fly ash-derived zeolites doped with silver nanoparticles for mercury (II) removal from water

Tauanov, Z., Tsakiridis, P. E., Mikhalovsky, S. V. & Inglezakis, V. J., Jul 21 2018, In : Journal of Environmental Management. 224, p. 164-171 8 p.

Research output: Contribution to journalArticle

Zeolites
Fly ash
fly ash
silver
Silver
3 Citations (Scopus)

The role of the N-terminal domain of human apurinic/apyrimidinic endonuclease 1, APE1, in DNA glycosylase stimulation

Kladova, O. A., Bazlekowa-Karaban, M., Baconnais, S., Piétrement, O., Ishchenko, A. A., Matkarimov, B., Iakovlev, D. A., Vasenko, A., Fedorova, O. S., Le Cam, E., Tudek, B., Kuznetsov, N. A. & Saparbaev, M., Apr 1 2018, In : DNA Repair. 64, p. 10-25 16 p.

Research output: Contribution to journalArticle

DNA-(Apurinic or Apyrimidinic Site) Lyase
DNA Glycosylases
Endonucleases
DNA
DNA Repair

Wavelet-Based Demodulation of Multimode Etched Fiber Bragg Grating Refractive Index Sensor

Ayupova, T., Sypabekova, M., Molardi, C., Bekmurzayeva, A., Shaimerdenova, M., Dukenbayev, K. & Tosi, D., Dec 22 2018, In : Sensors (Basel, Switzerland). 19, 1

Research output: Contribution to journalArticle

Refractometry
Multimode fibers
demodulation
Fiber Bragg gratings
Demodulation
2 Citations (Scopus)
Numismatics
Electromagnetic Fields
Mass Media
DNA Breaks
Therapeutic Uses
2017
5 Citations (Scopus)

Design of a Smartphone Plastic Optical Fiber Chemical Sensor for Hydrogen Sulfide Detection

Sultangazin, A., Kusmangaliyev, J., Aitkulov, A., Akilbekova, D., Olivero, M. & Tosi, D., Nov 1 2017, In : IEEE Sensors Journal. 17, 21, p. 6935-6940 6 p.

Research output: Contribution to journalArticle

Fiber optic chemical sensors
Plastic optical fibers
plastic fibers
hydrogen sulfide
Smartphones
9 Citations (Scopus)

Extracellular vesicles in gastrointestinal cancer in conjunction with microbiota: On the border of Kingdoms

Barteneva, N., Baiken, Y., Fasler-Kan, E., Alibek, K., Wang, S., Maltsev, N., Ponomarev, E., Sautbayeva, Z., Kauanova, S., Moore, A. & Beglinger, C., 2017, In : Biochimica et Biophysica Acta - Reviews on Cancer. 1868, p. 372-393 22 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)
10 Downloads (Pure)

Interrogation of coarsely sampled Tilted Fiber Bragg Grating (TFBG) sensors with KLT

Shaimerdenova, M., Bekmurzayeva, A., Sypabekova, M. & Tosi, D., Dec 2017, In : Optics Express. 25, 26, p. 33487-33496 10 p.

Research output: Contribution to journalArticle

Open Access
File
interrogation
Bragg gratings
refractivity
fibers
sensors

IOI host guidelines: General aspects

Matkarimov, B. T., Lee, G. C., Phillipps, M. & Schrijvers, E., Jan 1 2017, In : Olympiads in Informatics. 11, p. 175-192 18 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Linearly chirped fiber Bragg grating response to thermal gradient: from bench tests to the real-time assessment during in vivo laser ablations of biological tissue

Saccomandi, P., Korganbayev, S., Varalda, A., Gassino, R., Tosi, D., Massaroni, C., Caponero, M. A., Pop, R., Perrone, G., Diana, M., Vallan, A., Costamagna, G., Marescaux, J. & Schena, E., Sep 2017, In : Journal of Biomedical Optics. 22, 9, p. 1-9 9 p.

Research output: Contribution to journalArticle

Laser ablation
Fiber Bragg gratings
Thermal gradients
Bragg gratings
seats
34 Citations (Scopus)

Review and Analysis of Peak Tracking Techniques for Fiber Bragg Grating Sensors

Tosi, D., Oct 2017, In : Sensors. 17, 10, 35 p.

Research output: Contribution to journalArticle

Open Access
Fiber Bragg gratings
Bragg gratings
fibers
sensors
Sensors
19 Citations (Scopus)

Selection, characterization, and application of DNA aptamers for detection of Mycobacterium tuberculosis secreted protein MPT64

Sypabekova, M., Bekmurzayeva, A., Wang, R., Li, Y., Nogues, C. & Kanayeva, D., May 1 2017, In : Tuberculosis. 104, p. 70-78 9 p.

Research output: Contribution to journalArticle

Nucleotide Aptamers
SELEX Aptamer Technique
Mycobacterium tuberculosis
Oligonucleotides
Proteins
2016
4 Citations (Scopus)

Analysis of nucleocytoplasmic protein shuttling by imaging flow cytometry

Fasler-Kan, E., Baiken, Y., Vorobjev, I. A. & Barteneva, N. S., 2016, In : Methods in molecular biology (Clifton, N.J.). 1389, p. 127-137 11 p.

Research output: Contribution to journalArticle

Flow Cytometry
Cytoplasm
Proteins
NF-kappa B
Protein Transport
34 Citations (Scopus)

Poly(ADP-ribose) polymerases covalently modify strand break termini in DNA fragments in vitro

Talhaoui, I., Lebedeva, N. A., Zarkovic, G., Saint-Pierre, C., Kutuzov, M. M., Sukhanova, M. V., Matkarimov, B. T., Gasparutto, D., Saparbaev, M. K., Lavrik, O. I. & Ishchenko, A. A., Nov 2 2016, In : Nucleic Acids Research. 44, 19, p. 9279-9295 17 p.

Research output: Contribution to journalArticle

Poly(ADP-ribose) Polymerases
Adenosine Diphosphate Ribose
DNA
Phosphates
Adenosine Diphosphate
4 Citations (Scopus)

Simultaneous Detection of Multiple Fiber-Optic Fabry-Perot Interferometry Sensors with Cepstrum-Division Multiplexing

Tosi, D., Aug 1 2016, In : Journal of Lightwave Technology. 34, 15, p. 3622-3627 6 p., 7482655.

Research output: Contribution to journalArticle

multiplexing
division
fiber optics
interferometry
sensors
5 Citations (Scopus)

Structural comparison of AP endonucleases from the exonuclease III family reveals new amino acid residues in human AP endonuclease 1 that are involved in incision of damaged DNA

Redrejo-Rodríguez, M., Vigouroux, A., Mursalimov, A., Grin, I., Alili, D., Koshenov, Z., Akishev, Z., Maksimenko, A., Bissenbaev, A. K., Matkarimov, B. T., Saparbaev, M., Ishchenko, A. A. & Moréra, S., Sep 1 2016, In : Biochimie. 128-129, p. 20-33 14 p.

Research output: Contribution to journalArticle

Endonucleases
Repair
Nucleotides
Amino Acids
DNA