Biosensors and Bionstruments Laboratory

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2020

Fiber bragg gratings for medical applications and future challenges: A review

Lo Presti, D., Massaroni, C., Jorge Leitao, C. S., De Fatima Domingues, M., Sypabekova, M., Barrera, D., Floris, I., Massari, L., Oddo, C. M., Sales, S., Iordachita, I. I., Tosi, D. & Schena, E., 2020, In : IEEE Access. 8, p. 156863-156888 26 p., 9174987.

Research output: Contribution to journalArticle

Open Access

Fiber Optic Refractive Index Distributed Multi-Sensors by Scattering-Level Multiplexing with MgO Nanoparticle-Doped Fibers

Ayupova, T., Tosi, D., Shaimerdenova, M., Korganbayev, S., Sypabekova, M., Bekmurzayeva, A., Blanc, W., Sales, S., Guo, T. & Molardi, C., Mar 1 2020, In : IEEE Sensors Journal. 20, 5, p. 2504-2510 7 p., 8902068.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Optimizing silanization to functionalize stainless steel wire: Towards breast cancer stem cell isolation

Bekmurzayeva, A., Dukenbayev, K., Azevedo, H. S., Marsili, E., Tosi, D. & Kanayeva, D., Sep 2020, In : Materials. 13, 17, 3693.

Research output: Contribution to journalArticle

Open Access

Optimizing silanization to functionalize stainless steel wire: towards breast cancer stem cell isolation

Bekmurzayeva, A., Dukenbayev, K., Azevedo, H., Marsili, E., Tosi, D. & Kanayeva, D., Aug 21 2020, In : Materials. 13, 3693

Research output: Contribution to journalArticle

Open Access
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4 Downloads (Pure)

Reflector-less nanoparticles doped optical fiber biosensor for the detection of proteins: Case thrombin

Sypabekova, M., Aitkulov, A., Blanc, W. & Tosi, D., Oct 1 2020, In : Biosensors and Bioelectronics . 165, 112365.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2019
Open Access
2 Citations (Scopus)

CTHRC1: A New Candidate Biomarker for Improved Rheumatoid Arthritis Diagnosis

Myngbay, A., Bexeitov, Y., Adilbayeva, A., Assylbekov, Z., Yevstratenko BP, Aitzhanova RM, Vyacheslav A. Adarichev, Matkarimov, B. & Kunz, J., Jun 12 2019, In : Frontiers in Immunology. 10, JUN, p. 1353 1353.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Functionalized etched tilted fiber Bragg grating aptasensor for label-free protein detection

Sypabekova, M., Korganbayev, S., González-Vila, Á., Caucheteur, C., Shaimerdenova, M., Ayupova, T., Bekmurzayeva, A., Vangelista, L. & Tosi, D., Dec 15 2019, In : Biosensors and Bioelectronics . 146, 111765.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Ile351, Leu355 and Ile461 residues are essential for catalytic activity of bovine cytochrome P450scc (CYP11A1)

Glyakina, A. V., Strizhov, N. I., Karpov, M. V., Dovidchenko, N. V., Matkarimov, B., Isaeva, L. V., Efimova, V. S., Rubtsov, M. A., Novikova, L. A., Donova, M. V. & Galzitskaya, O. V., Mar 1 2019, In : Steroids. p. 80-90 11 p.

Research output: Contribution to journalArticle

Mechanism of stimulation of DNA binding of the transcription factors by human apurinic/apyrimidinic endonuclease 1, APE1

Bazlekowa-Karaban, M., Prorok, P., Baconnais, S., Taipakova, S., Akishev, Z., Zembrzuska, D., Popov, A. V., Endutkin, A. V., Groisman, R., Ishchenko, A. A., Matkarimov, B., Bissenbaev, A., Le Cam, E., Zharkov, D. O., Tudek, B. & Saparbaev, M., Oct 1 2019, In : DNA Repair. 82, 102698.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Refractive Index Sensor by Interrogation of Etched MgO Nanoparticle-Doped Optical Fiber Signature

Korganbayev, S., Shaimerdenova, M., Ayupova, T., Sypabekova, M., Bekmurzayeva, A., Blanc, W., Molardi, C. & Tosi, D., Aug 1 2019, In : IEEE Photonics Technology Letters. 31, 15, p. 1253-1256 4 p., 8747358.

Research output: Contribution to journalArticle

7 Citations (Scopus)
2018

Aberrant repair initiated by the adenine-DNA glycosylase does not play a role in UV-induced mutagenesis in Escherichia coli

Zutterling, C., Mursalimov, A., Talhaoui, I., Koshenov, Z., Akishev, Z., Bissenbaev, A. K., Mazon, G., Geacintov, N. E., Gasparutto, D., Groisman, R., Zharkov, D. O., Matkarimov, B. & Saparbaev, M., 2018, In : PeerJ. 2018, 12, e6029.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Characterization of DNA ADP-ribosyltransferase activities of PARP2 and PARP3: New insights into DNA ADP-ribosylation

Zarkovic, G., Belousova, E. A., Talhaoui, I., Saint-Pierre, C., Kutuzov, M. M., Matkarimov, B. T., Biard, D., Gasparutto, D., Lavrik, O. I. & Ishchenko, A. A., 2018, In : Nucleic Acids Research. 46, 5, p. 2417-2431 15 p.

Research output: Contribution to journalArticle

44 Citations (Scopus)

Detection of thermal gradients through fiber-optic Chirped Fiber Bragg Grating (CFBG): Medical thermal ablation scenario

Korganbayev, S., Orazayev, Y., Sovetov, S., Bazyl, A., Schena, E., Massaroni, C., Gassino, R., Vallan, A., Perrone, G., Saccomandi, P., Caponero, M. A., Iadicicco, A. & Tosi, D., 2018, In : Optical Fiber Technology. 41, p. 48-55 8 p.

Research output: Contribution to journalArticle

Open Access
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23 Citations (Scopus)
48 Downloads (Pure)

Fiber optic refractive index sensors through spectral detection of Rayleigh backscattering in a chemically etched MgO-based nanoparticle-doped fiber

Sypabekova, M., Korganbayev, S., Blanc, W., Ayupova, T., Bekmurzayeva, A., Shaimerdenova, M., Dukenbayev, K., Molardi, C. & Tosi, D., Dec 15 2018, In : Optics Letters. 43, 24, p. 5945-5948 4 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Synthetic coal fly ash-derived zeolites doped with silver nanoparticles for mercury (II) removal from water

Tauanov, Z., Tsakiridis, P. E., Mikhalovsky, S. V. & Inglezakis, V. J., Jul 21 2018, In : Journal of Environmental Management. 224, p. 164-171 8 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

The role of the N-terminal domain of human apurinic/apyrimidinic endonuclease 1, APE1, in DNA glycosylase stimulation

Kladova, O. A., Bazlekowa-Karaban, M., Baconnais, S., Piétrement, O., Ishchenko, A. A., Matkarimov, B., Iakovlev, D. A., Vasenko, A., Fedorova, O. S., Le Cam, E., Tudek, B., Kuznetsov, N. A. & Saparbaev, M., Apr 1 2018, In : DNA Repair. 64, p. 10-25 16 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Wavelet-Based Demodulation of Multimode Etched Fiber Bragg Grating Refractive Index Sensor

Ayupova, T., Sypabekova, M., Molardi, C., Bekmurzayeva, A., Shaimerdenova, M., Dukenbayev, K. & Tosi, D., Dec 22 2018, In : Sensors (Basel, Switzerland). 19, 1, 39.

Research output: Contribution to journalArticle

6 Citations (Scopus)
2017

Design of a Smartphone Plastic Optical Fiber Chemical Sensor for Hydrogen Sulfide Detection

Sultangazin, A., Kusmangaliyev, J., Aitkulov, A., Akilbekova, D., Olivero, M. & Tosi, D., Nov 1 2017, In : IEEE Sensors Journal. 17, 21, p. 6935-6940 6 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Extracellular vesicles in gastrointestinal cancer in conjunction with microbiota: On the border of Kingdoms

Barteneva, N., Baiken, Y., Fasler-Kan, E., Alibek, K., Wang, S., Maltsev, N., Ponomarev, E., Sautbayeva, Z., Kauanova, S., Moore, A. & Beglinger, C., 2017, In : Biochimica et Biophysica Acta - Reviews on Cancer. 1868, p. 372-393 22 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Interrogation of coarsely sampled Tilted Fiber Bragg Grating (TFBG) sensors with KLT

Shaimerdenova, M., Bekmurzayeva, A., Sypabekova, M. & Tosi, D., Dec 2017, In : Optics Express. 25, 26, p. 33487-33496 10 p.

Research output: Contribution to journalArticle

Open Access
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10 Citations (Scopus)
18 Downloads (Pure)

IOI host guidelines: General aspects

Matkarimov, B. T., Lee, G. C., Phillipps, M. & Schrijvers, E., Jan 1 2017, In : Olympiads in Informatics. 11, p. 175-192 18 p.

Research output: Contribution to journalArticle

Linearly chirped fiber Bragg grating response to thermal gradient: from bench tests to the real-time assessment during in vivo laser ablations of biological tissue

Saccomandi, P., Korganbayev, S., Varalda, A., Gassino, R., Tosi, D., Massaroni, C., Caponero, M. A., Pop, R., Perrone, G., Diana, M., Vallan, A., Costamagna, G., Marescaux, J. & Schena, E., Sep 2017, In : Journal of Biomedical Optics. 22, 9, p. 1-9 9 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Review and Analysis of Peak Tracking Techniques for Fiber Bragg Grating Sensors

Tosi, D., Oct 2017, In : Sensors. 17, 10, 35 p.

Research output: Contribution to journalArticle

Open Access
66 Citations (Scopus)

Selection, characterization, and application of DNA aptamers for detection of Mycobacterium tuberculosis secreted protein MPT64

Sypabekova, M., Bekmurzayeva, A., Wang, R., Li, Y., Nogues, C. & Kanayeva, D., May 1 2017, In : Tuberculosis. 104, p. 70-78 9 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)
2016

Analysis of nucleocytoplasmic protein shuttling by imaging flow cytometry

Fasler-Kan, E., Baiken, Y., Vorobjev, I. A. & Barteneva, N. S., 2016, In : Methods in molecular biology (Clifton, N.J.). 1389, p. 127-137 11 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Poly(ADP-ribose) polymerases covalently modify strand break termini in DNA fragments in vitro

Talhaoui, I., Lebedeva, N. A., Zarkovic, G., Saint-Pierre, C., Kutuzov, M. M., Sukhanova, M. V., Matkarimov, B. T., Gasparutto, D., Saparbaev, M. K., Lavrik, O. I. & Ishchenko, A. A., Nov 2 2016, In : Nucleic Acids Research. 44, 19, p. 9279-9295 17 p.

Research output: Contribution to journalArticle

58 Citations (Scopus)

Simultaneous Detection of Multiple Fiber-Optic Fabry-Perot Interferometry Sensors with Cepstrum-Division Multiplexing

Tosi, D., Aug 1 2016, In : Journal of Lightwave Technology. 34, 15, p. 3622-3627 6 p., 7482655.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Structural comparison of AP endonucleases from the exonuclease III family reveals new amino acid residues in human AP endonuclease 1 that are involved in incision of damaged DNA

Redrejo-Rodríguez, M., Vigouroux, A., Mursalimov, A., Grin, I., Alili, D., Koshenov, Z., Akishev, Z., Maksimenko, A., Bissenbaev, A. K., Matkarimov, B. T., Saparbaev, M., Ishchenko, A. A. & Moréra, S., Sep 1 2016, In : Biochimie. 128-129, p. 20-33 14 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)
2015

Inclusion of the most important multi-particle interactions in the amber force field and application of the revised force field to molecular dynamics calculations

Balabaev, N. K., Garbuzinskiy, S. A., Galzitskaya, O. V., Glyakina, A. V., Matkarimov, B. T. & Finkelstein, A. V., Jan 1 2015, In : Mathematical Biology and Bioinformatics. 10, 2, p. 427-435 9 p.

Research output: Contribution to journalArticle

Oxidatively generated guanine(C8)-Thymine(N3) intrastrand cross-links in double-stranded DNA are repaired by base excision repair pathways

Talhaoui, I., Shafirovich, V., Liu, Z., Saint-Pierre, C., Akishev, Z., Matkarimov, B. T., Gasparutto, D., Geacintov, N. E. & Saparbaev, M., Jun 5 2015, In : Journal of Biological Chemistry. 290, 23, p. 14610-14617 8 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)
2014

Fiber-optic chirped FBG for distributed thermal monitoring of ex-vivo radiofrequency ablation of liver

Tosi, D., Macchi, E. G., Gallati, M., Braschi, G., Cigada, A., Rossi, S., Leen, G. & Lewis, E., Jun 1 2014, In : Biomedical Optics Express. 5, 6, p. 1799-1811 13 p., A1799.

Research output: Contribution to journalArticle

61 Citations (Scopus)

Fiber-optic combined FPI/FBG sensors for monitoring of radiofrequency thermal ablation of liver tumors: Ex vivo experiments

Tosi, D., Macchi, E. G., Braschi, G., Cigada, A., Gallati, M., Rossi, S., Poeggel, S., Leen, G. & Lewis, E., Apr 1 2014, In : Applied Optics. 10, p. 2136-2144 9 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)
2013

Detection of tuberculosis using biosensors: Recent progress and future trends

Kanayeva, D., Bekniyazov, I. & Ashikbayeva, Z., Jul 24 2013, Sensors and Transducers, 149, 2, p. 166-173 8 p.

Research output: Contribution to specialist publicationArticle

4 Citations (Scopus)

Role of viruses in the development of breast cancer

Alibek, K., Kakpenova, A., Mussabekova, A., Sypabekova, M. & Karatayeva, N., 2013, In : Infectious Agents and Cancer. 8, 1, 32.

Research output: Contribution to journalArticle

35 Citations (Scopus)
1993

Multipoint correlators of the impenetrable Bose gas

Matkarimov, B. T., Dec 1 1993, In : Journal of Physics A: General Physics. 26, 20, p. 5189-5196 8 p., 007.

Research output: Contribution to journalArticle

1 Citation (Scopus)
1990

Inverse spectral transform for the Ishimori equation: I. Initial value problem

Konopelchenko, B. G. & Matkarimov, B. T., Jan 1 1990, In : Journal of Mathematical Physics. 31, 11, p. 2737-2746 10 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)
1989

On the inverse scattering transform for the Ishimori equation

Konopelchenko, B. G. & Matkarimov, B. T., Feb 20 1989, In : Physics Letters A. 135, 3, p. 183-189 7 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)