Research Output 1996 2019

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2019

APBioNet's annual International Conference on Bioinformatics (InCoB) returns to India in 2018

Ahmad, S., Gromiha, M. M., Raghava, G. P. S., Schönbach, C. & Ranganathan, S., Apr 18 2019, In : BMC Genomics. 19, 266.

Research output: Contribution to journalArticle

Open Access
Computational Biology
India
Genomics
Public Opinion
Indonesia

CTHRC1: A New Candidate Biomarker for Improved Rheumatoid Arthritis Diagnosis

Myngbay, A., Bexeitov, Y., Adilbayeva, A., Assylbekov, Z., Yevstratenko BP, Aitzhanova RM, Vyacheslav A. Adarichev, Matkarimov, B. & Kunz, J., Jun 12 2019, In : Frontiers in Immunology. 10, JUN, p. 1353 1353.

Research output: Contribution to journalArticle

Open Access
Rheumatoid Arthritis
Collagen
Biomarkers
Reactive Arthritis
Osteoarthritis

Fine structure and dynamics of EB3 binding zones on microtubules in fibroblast cells

Mustyatsa, V. V., Kostarev, A. V., Tvorogova, A. V., Ataullakhanov, F. I., Gudimchuk, N. B. & Vorobyev, I., Aug 1 2019, In : Molecular biology of the cell. 30, 17, p. 2105-2114 10 p.

Research output: Contribution to journalArticle

Open Access
Microtubules
Fibroblasts
Islands
Carrier Proteins
Guanosine Triphosphate

Non-linear dose response of lymphocyte cell lines to microtubule inhibitors

Potashnikova, D. M., Saidova, E. A. A., Tvorogova, A. V., Sheval, E. V. & Vorobyev, I., Jan 1 2019, In : Frontiers in Pharmacology. 10, APR, 436.

Research output: Contribution to journalArticle

Open Access
Microtubules
Lymphocytes
Cell Line
Cell Death
Cell Cycle

Transition from mesenchymal to bleb-based motility is predominantly exhibited by CD133-positive subpopulation of fibrosarcoma cells

Chikina, A. S., Rubtsova, S. N., Lomakina, M. E., Potashnikova, D. M., Vorobyev, I. & Alexandrova, A. Y., Jan 1 2019, (Accepted/In press) In : Biology of the Cell.

Research output: Contribution to journalArticle

Fibrosarcoma
Blister
Cell Movement
Stem Cells
Actin-Related Protein 2-3 Complex
2018
3 Citations (Scopus)

Bidirectional shift of group III metabotropic glutamate receptor-mediated synaptic depression in the epileptic hippocampus

Dammann, F., Kirschstein, T., Guli, X., Müller, S., Porath, K., Rohde, M., Tokay, T. & Köhling, R., Jan 1 2018, In : Epilepsy Research. 139, p. 157-163 7 p.

Research output: Contribution to journalArticle

Metabotropic Glutamate Receptors
Synapses
Hippocampus
Protein Isoforms
Down-Regulation
1 Citation (Scopus)

Dynamic microtubules drive fibroblast spreading

Tvorogova, A., Saidova, A., Smirnova, T. & Vorobyev, I., Jan 1 2018, In : Biology Open. 7, 12, bio038968.

Research output: Contribution to journalArticle

Myosin Type II
Fibroblasts
Microtubules
microtubules
fibroblasts
3 Citations (Scopus)
Surface chemistry
Adsorbents
Tuberculosis
Artificial Receptors
Proteins
2 Citations (Scopus)

Mitochondrial complex IV mutation increases reactive oxygen species production and reduces lifespan in aged mice

Reichart, G., Mayer, J., Zehm, C., Kirschstein, T., Tokay, T., Lange, F., Baltrusch, S., Tiedge, M., Fuellen, G., Ibrahim, S. & Köhling, R., Jan 1 2018, (Accepted/In press) In : Acta Physiologica. e13214.

Research output: Contribution to journalArticle

Reactive Oxygen Species
Mutation
Mitochondrial DNA
Electron Transport Complex IV
Adenine
2 Citations (Scopus)

Molecular epidemiology of HIV-1 subtype A in former Soviet Union countries

Aibekova, L., Foley, B., Hortelano Hap, G., Raees, M., Abdraimov, S., Toichuev, R. & Ali, S., Feb 1 2018, In : PLoS One. 13, 2, e0191891.

Research output: Contribution to journalArticle

molecular epidemiology
Molecular Epidemiology
USSR
Human immunodeficiency virus 1
HIV-1

Nuclear MET requires ARF and is inhibited by carbon nanodots through binding to phospho-tyrosine in prostate cancer

Xie, Y., Fan, H., Lu, W., Yang, Q., Nurkesh, A., Yeleussizov, T., Maipas, A., Lu, J., Manarbek, L., Chen, Z. & Benassi, E., Jan 1 2018, (Accepted/In press) In : Oncogene.

Research output: Contribution to journalArticle

Tyrosine
Prostatic Neoplasms
Carbon
Castration
Cytoplasmic and Nuclear Receptors

Patient-centered beliefs among patients and providers in Kazakhstan

Zhumadilova, A., Craig, B. J. & Bobak, M., Mar 1 2018, In : Ochsner Journal. 18, 1, p. 46-52 7 p.

Research output: Contribution to journalArticle

Kazakhstan
Health Personnel
Nurses
Communication

Recombinant Tyrosinase from Verrucomicrobium spinosum: Isolation, Characteristics, and Use for the Production of a Protein with Adhesive Properties

Aksambayeva, A. S., Zhaparova, L. R., Shagyrova, Z. S., Zhiyenbay, E., Nurgozhin, T., Ramankulov, E. M. & Shustov, A. V., Dec 1 2018, In : Applied Biochemistry and Microbiology. 54, 8, p. 780-792 13 p.

Research output: Contribution to journalArticle

Verrucomicrobia
Monophenol Monooxygenase
Post Translational Protein Processing
Adhesives
Escherichia coli

Specific and reliable detection of myosin 1c isoform a by RTqPCR in prostate cancer cells

Saidova, A. A., Potashnikova, D. M., Tvorogova, A. V., Maly, I. V., Hofmann, W. A. & Vorobyev, I., Jan 1 2018, In : PeerJ. 2018, 11, e5970.

Research output: Contribution to journalArticle

prostatic neoplasms
Myosins
myosin
Prostatic Neoplasms
Protein Isoforms
2 Citations (Scopus)

Therapeutic potential of a scorpion venom-derived antimicrobial peptide and its homologs against antibiotic-resistant Gram-positive bacteria

Liu, G., Yang, F., Li, F., Li, Z., Lang, Y., Shen, B., Wu, Y., Li, W., Harrison, P. L., Strong, P. N., Xie, Y., Miller, K. & Cao, Z., May 29 2018, In : Frontiers in Microbiology. 9, MAY, 1159.

Research output: Contribution to journalArticle

Scorpion Venoms
Gram-Positive Bacteria
Anti-Bacterial Agents
Peptides
Bacteria

Top soil physical and chemical properties in Kazakhstan across a north-south gradient

Yapiyev, V., Gilman, C. P., Kabdullayeva, T., Suleimenova, A., Shagadatova, A., Duisembay, A., Naizabekov, S., Mussurova, S., Sydykova, K., Raimkulov, I., Kabimoldayev, I., Abdrakhmanova, A., Omarkulova, S., Nurmukhambetov, D., Kudarova, A., Malgazhdar, D., Schönbach, C. & Inglezakis, V., Nov 13 2018, In : Scientific data. 5, 1 p.

Research output: Contribution to journalArticle

Kazakhstan
Chemical properties
Soil
Physical properties
Gradient
2017
5 Citations (Scopus)

Analysis of origin and protein-protein interaction maps suggests a distinct oncogenic role of nuclear EGFR during cancer evolution

Sharip, A., Abdukhakimova, D., Wang, X., Kim, A., Kim, Y., Sharip, A., Orakov, A., Miao, L., Sun, Q., Chen, Y., Chen, Z. & Xie, Y., Jan 1 2017, In : Journal of Cancer. 8, 5, p. 903-912 10 p., 961.

Research output: Contribution to journalArticle

Protein Interaction Maps
Nuclear Localization Signals
Neoplasms
Prostatic Neoplasms
Androgen Receptors
2 Citations (Scopus)

CFD modeling of chamber filling in a micro-biosensor for protein detection

Islamov, M., Sypabekova, M., Kanayeva, D. & Rojas-Solórzano, L., Oct 3 2017, In : Biosensors. 7, 4, 45.

Research output: Contribution to journalArticle

Biosensing Techniques
Hydrodynamics
Microfluidics
Biosensors
Computational fluid dynamics
1 Citation (Scopus)

Comparison of the mRNA expression profile of B-cell receptor components in normal CD5-high B-lymphocytes and chronic lymphocytic leukemia: a key role of ZAP70

Gladkikh, A. A., Potashnikova, D. M., Tatarskiy, V., Yastrebova, M., Khamidullina, A., Barteneva, N. & Vorobjev, I., Dec 1 2017, In : Cancer Medicine. 6, 12, p. 2984-2997 14 p.

Research output: Contribution to journalArticle

B-Cell Leukemia
B-Cell Chronic Lymphocytic Leukemia
Cellular Structures
B-Lymphocytes
Messenger RNA
4 Citations (Scopus)

Dysregulation of YAP by ARF Stimulated with Tea-derived Carbon Nanodots

Xie, Y., Sun, Q., Nurkesh, A. A., Lu, J., Kauanova, S., Feng, J., Tursynkhan, D., Yang, Q., Kassymbek, A., Karibayev, M., Duisenova, K., Fan, H., Wang, X., Manarbek, L., Maipas, A., Chen, Z. & Balanay, M. P., Dec 1 2017, In : Scientific Reports. 7, 1, 16441.

Research output: Contribution to journalArticle

Catenins
Tea
Prostatic Neoplasms
Carbon
Wnt Signaling Pathway
9 Citations (Scopus)

Extracellular vesicles in gastrointestinal cancer in conjunction with microbiota: On the border of Kingdoms

Barteneva, N., Baiken, Y., Fasler-Kan, E., Alibek, K., Wang, S., Maltsev, N., Ponomarev, E., Sautbayeva, Z., Kauanova, S., Moore, A. & Beglinger, C., 2017, In : Biochimica et Biophysica Acta - Reviews on Cancer. 1868, p. 372-393 22 p.

Research output: Contribution to journalArticle

Functional Metaplasticity of Hippocampal Schaffer Collateral-CA1 Synapses Is Reversed in Chronically Epileptic Rats

Rehberg, M., Kirschstein, T., Guli, X., Müller, S., Rohde, M., Franz, D., Tokay, T. & Köhling, R., Jan 1 2017, In : Neural Plasticity. 2017, 8087401.

Research output: Contribution to journalArticle

Pilocarpine
Long-Term Potentiation
Synapses
Neuronal Plasticity
Hippocampus
6 Citations (Scopus)

Inhibition of Cancer Cell Proliferation by Carbon Dots Derived from Date Pits at Low-Dose

Xie, Y., Filchakova, O., Yang, Q., Yesbolatov, Y., Tursynkhan, D., Kassymbek, A., Bouhrara, M., Wang, K., Balanay, M. & Fan, H., Jan 1 2017, In : ChemistrySelect. 2, 14, p. 4079-4083 5 p.

Research output: Contribution to journalArticle

Cell proliferation
Carbon
Buffers
Phosphates
Nanostructured materials
2 Citations (Scopus)

Inhibition of osteoclast differentiation and collagen antibody-induced arthritis by CTHRC1

Jin, Y. R., Stohn, J. P., Wang, Q., Nagano, K., Baron, R., Bouxsein, M. L., Rosen, C. J., Adarichev, V. A. & Lindner, V., Apr 1 2017, In : Bone. 97, p. 153-167 15 p.

Research output: Contribution to journalArticle

Experimental Arthritis
Osteoclasts
Collagen
Antibodies
Osteoblasts
1 Citation (Scopus)

PSA and Prostate Health Index based prostate cancer screening in a hereditary migration complicated population: Implications in precision diagnosis

Akizhanova, M., Iskakova, E. E., Kim, V., Wang, X., Kogay, R., Turebayeva, A., Sun, Q., Zheng, T., Wu, S., Miao, L. & Xie, Y., Apr 10 2017, In : Journal of Cancer. 8, 7, p. 1223-1228 6 p.

Research output: Contribution to journalArticle

Prostate-Specific Antigen
Early Detection of Cancer
Prostate
Prostatic Neoplasms
Health
19 Citations (Scopus)

Selection, characterization, and application of DNA aptamers for detection of Mycobacterium tuberculosis secreted protein MPT64

Sypabekova, M., Bekmurzayeva, A., Wang, R., Li, Y., Nogues, C. & Kanayeva, D., May 1 2017, In : Tuberculosis. 104, p. 70-78 9 p.

Research output: Contribution to journalArticle

Nucleotide Aptamers
SELEX Aptamer Technique
Mycobacterium tuberculosis
Oligonucleotides
Proteins
12 Citations (Scopus)

SKP2 loss destabilizes EZH2 by promoting TRAF6-mediated ubiquitination to suppress prostate cancer

Lu, W., Liu, S., Li, B., Xie, Y., Izban, M. G., Ballard, B. R., Sathyanarayana, S. A., Adunyah, S. E., Matusik, R. J. & Chen, Z., Mar 1 2017, In : Oncogene. 36, 10, p. 1364-1373 10 p.

Research output: Contribution to journalArticle

TNF Receptor-Associated Factor 6
Ubiquitination
Prostatic Neoplasms
Castration
Up-Regulation
2 Citations (Scopus)

Strong Surface Enhanced Florescence of Carbon Dot Labeled Bacteria Cells Observed with High Contrast on Gold Film

Bukasov, R., Filchakova, O., Gudun, K. & Bouhrara, M., Nov 10 2017, (Accepted/In press) In : Journal of Fluorescence. p. 1-4 4 p.

Research output: Contribution to journalArticle

gold
Gold
Bacteria
Carbon
Fluorescence
2 Citations (Scopus)

Structure and Biological Activity of a Turripeptide from Unedogemmula bisaya Venom

Omaga, C. A., Carpio, L. D., Imperial, J. S., Daly, N. L., Gajewiak, J., Flores, M. S., Espino, S. S., Christensen, S., Filchakova, O. M., López-Vera, E., Raghuraman, S., Olivera, B. M. & Concepcion, G. P., Nov 14 2017, In : Biochemistry. 56, 45, p. 6051-6060 10 p.

Research output: Contribution to journalArticle

Venoms
Bioactivity
Cysteine
Peptides
Gastropoda
3 Citations (Scopus)

Traditional risk factors of acute coronary syndrome in four different male populations - total cholesterol value does not seem to be relevant risk factor

Hubacek, J. A., Stanek, V., Gebauerova, M., Adamkova, V., Lesauskaite, V., Zaliaduonyte-Peksiene, D., Tamosiunas, A., Supiyev, A., Kossumov, A., Zhumadilova, A. & Pitha, J., Apr 5 2017, In : Physiological Research. 66, Supplementum 1, p. S121-S128

Research output: Contribution to journalArticle

Acute Coronary Syndrome
Cholesterol
Kazakhstan
Population
Smoking

Рекомбинантная тирозиназа Verrucomicrobium spinosum: выделение, характеристика и использование для производства белка с адгезивными свойствами

Translated title of the contribution: Recombinant tyrosinase from verrucomicrobium spinosum: Isolation, characteristics and use for production of protein with adhesive propertiesAksambayeva, A. S., Zhaparova, L. R., Shagyrova, Z. S., Zhiyenbay, E., Nurgozhin, T., Ramankulov, E. M. & Shustov, A. V., Jan 1 2017, In : Biotekhnologiya. 33, 6, p. 12-27 16 p.

Research output: Contribution to journalArticle

Verrucomicrobia
Monophenol Monooxygenase
Adhesives
protein
Proteins
2016
10 Citations (Scopus)

Microalgal cytometric analysis in the presence of endogenous autofluorescent pigments

Dashkova, V., Segev, E., Malashenkov, D., Kolter, R., Vorobyev, I. & Barteneva, N., 2016, In : Algal Research.

Research output: Contribution to journalArticle

9 Citations (Scopus)

MMP7 interacts with ARF in nucleus to potentiate tumor microenvironments for prostate cancer progression in vivo

Xie, Y., Lu, W., Liu, S., Yang, Q., Shawn Goodwin, J., Sathyanarayana, S. A., Pratap, S. & Chen, Z., 2016, In : Oncotarget. 7, 30, p. 47609-47619 11 p.

Research output: Contribution to journalArticle

Tumor Microenvironment
Prostatic Neoplasms
Cadherins
Extracellular Matrix
Tumor Suppressor Protein p14ARF
3 Citations (Scopus)
Aryl Hydrocarbon Receptors
Neoplastic Stem Cells
Tryptophan
Recurrence
Dioxins

P2Y receptor-mediated transient relaxation of rat longitudinal ileum preparations involves phospholipase C activation, intracellular Ca(2+) release and SK channel activation

Mader, F., Krause, L., Tokay, T., Hakenberg, O. W., Köhling, R. & Kirschstein, T., May 1 2016, In : Acta Pharmacologica Sinica. 37, 5, p. 617-628 12 p.

Research output: Contribution to journalArticle

Purinergic P2Y1 Receptors
Type C Phospholipases
Ileum
Adenosine Triphosphate
Baths
2015

GIW and InCoB are advancing bioinformatics in the Asia-Pacific

Schönbach, C., Horton, P., Yiu, S. M., Tan, T. W. & Ranganathan, S., Dec 18 2015, In : BMC Bioinformatics. 16, 18, I1.

Research output: Contribution to journalArticle

Informatics
Bioinformatics
Computational Biology
Genome
Genes
2014

InCoB2014: Bioinformatics to tackle the data to knowledge challenge

Ranganathan, S., Tan, T. W. & Schönbach, C., Dec 8 2014, In : BMC Bioinformatics. 15, 16, I1.

Research output: Contribution to journalArticle

Bioinformatics
Computational Biology
Informatics
Proteins
Breadth
12 Citations (Scopus)

Synthesis of novel phosphonic-type activity-based probes for neutrophil serine proteases and their application in spleen lysates of different organisms

Grzywa, R., Burchacka, E., Łęcka, M., Winiarski, Ł., Walczak, M., Łupicka-Słowik, A., Wysocka, M., Burster, T., Bobrek, K., Csencsits-Smith, K., Lesner, A. & Sieńczyk, M., Nov 24 2014, In : ChemBioChem. 15, 17, p. 2605-12 8 p.

Research output: Contribution to journalArticle

Serine Proteases
Neutrophils
Spleen
Peptide Hydrolases
Cathepsin G
2013
16 Citations (Scopus)

BlockLogo: visualization of peptide and sequence motif conservation

Olsen, L. R., Kudahl, U. J., Simon, C., Sun, J., Schönbach, C., Reinherz, E. L., Zhang, G. L. & Brusic, V., Dec 31 2013, In : Journal of Immunological Methods. 400-401, 1, p. 37-44 8 p.

Research output: Contribution to journalArticle

Sequence Alignment
Peptides
Position-Specific Scoring Matrices
B-Lymphocyte Epitopes
Amino Acid Motifs
5 Citations (Scopus)

Childhood cancers: What is a possible role of infectious agents?

Alibek, K., Mussabekova, A., Kakpenova, A., Duisembekova, A., Baiken, Y., Aituov, B., Karatayeva, N. & Zhussupbekova, S., Dec 10 2013, In : Infectious Agents and Cancer. 8, 1, 48.

Research output: Contribution to journalArticle

Papillomaviridae
Neoplasms
Polyomavirus
Herpesviridae
Infection
2012
16 Citations (Scopus)

Application of a novel highly sensitive activity-based probe for detection of cathepsin G

Zou, F., Schmon, M., Sienczyk, M., Grzywa, R., Palesch, D., Boehm, B. O., Sun, Z. L., Watts, C., Schirmbeck, R. & Burster, T., Feb 15 2012, In : Analytical Biochemistry. 421, 2, p. 667-72 6 p.

Research output: Contribution to journalArticle

Cathepsin G
Human Herpesvirus 4
Viruses
Serine Proteases
Cathepsin D
21 Citations (Scopus)

Cathepsin S dominates autoantigen processing in human thymic dendritic cells

Stoeckle, C., Quecke, P., Rückrich, T., Burster, T., Reich, M., Weber, E., Kalbacher, H., Driessen, C., Melms, A. & Tolosa, E., Jun 2012, In : Journal of Autoimmunity. 38, 4, p. 332-43 12 p.

Research output: Contribution to journalArticle

cathepsin S
Autoantigens
Dendritic Cells
Antigen-Presenting Cells
T-Lymphocyte Epitopes
1 Citation (Scopus)
Cysteine Proteases
CHO Cells
proteasome endopeptidase complex
Proteasome Endopeptidase Complex
Threonine
2011
3 Citations (Scopus)

Invariant chain processing is independent of cathepsin variation between primary human B cells/dendritic cells and B-lymphoblastoid cells

Reich, M., Zou, F., Sieńczyk, M., Oleksyszyn, J., Boehm, B. O. & Burster, T., 2011, In : Cellular Immunology. 269, 2, p. 96-103 8 p.

Research output: Contribution to journalArticle

Cathepsins
Dendritic Cells
B-Lymphocytes
Antigen-Presenting Cells
cathepsin S
11 Citations (Scopus)

Regulation of cathepsin G reduces the activation of proinsulin-reactive T cells from type 1 diabetes patients

Zou, F., Schäfer, N., Palesch, D., Brücken, R., Beck, A., Sienczyk, M., Kalbacher, H., Sun, Z., Boehm, B. O. & Burster, T., 2011, In : PLoS One. 6, 8, p. e22815

Research output: Contribution to journalArticle

cathepsin G
proinsulin
Cathepsin G
Proinsulin
T-cells
5 Citations (Scopus)

Was the serine protease cathepsin G discovered by S. G. Hedin in 1903 in bovine spleen?

Palesch, D., Sieńczyk, M., Oleksyszyn, J., Reich, M., Wieczerzak, E., Boehm, B. O. & Burster, T., 2011, In : Acta Biochimica Polonica. 58, 1, p. 39-44 6 p.

Research output: Contribution to journalArticle

Cathepsin G
Serine Proteases
Peptide Hydrolases
Spleen
Pepsin A
2010
3 Citations (Scopus)

A proinsulin 74-90-derived protease-resistant, altered peptide ligand increases TGF-beta 1 secretion in PBMC from patients with type 1 diabetes mellitus

van Aalst, D., Kalbacher, H., Palesch, D., Zou, F., Spyrantis, A., Rosinger, S., Boehm, B. O. & Burster, T., May 2010, In : Journal of Leukocyte Biology. 87, 5, p. 943-8 6 p.

Research output: Contribution to journalArticle

Transforming Growth Factor beta1
Proinsulin
Type 1 Diabetes Mellitus
Peptide Hydrolases
Ligands
6 Citations (Scopus)

Cathepsin A is expressed in primary human antigen-presenting cells

Reich, M., Spindler, K-D., Burret, M., Kalbacher, H., Boehm, B. O. & Burster, T., Feb 16 2010, In : Immunology Letters. 128, 2, p. 143-7 5 p.

Research output: Contribution to journalArticle

Cathepsin A
Antigen-Presenting Cells
Cathepsins
Peptides
B-Lymphocyte Subsets
2009
17 Citations (Scopus)

Application of specific cell permeable cathepsin G inhibitors resulted in reduced antigen processing in primary dendritic cells

Reich, M., Lesner, A., Legowska, A., Sieńczyk, M., Oleksyszyn, J., Boehm, B. O. & Burster, T., Sep 2009, In : Molecular Immunology. 46, 15, p. 2994-9 6 p.

Research output: Contribution to journalArticle

Cathepsin G
Antigen Presentation
Dendritic Cells
Blood Cells
T-Lymphocytes
22 Citations (Scopus)

Cathepsin G is differentially expressed in primary human antigen-presenting cells

Stoeckle, C., Sommandas, V., Adamopoulou, E., Belisle, K., Schiekofer, S., Melms, A., Weber, E., Driessen, C., Boehm, B. O., Tolosa, E. & Burster, T., 2009, In : Cellular Immunology. 255, 1-2, p. 41-5 5 p.

Research output: Contribution to journalArticle

Cathepsin G
Antigen-Presenting Cells
Dendritic Cells
Cathepsins
Fibroblasts