Research Output

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2017

Antidote application: An educational system for treatment of common toxin overdose

Long, J. B., Chitkushev, L., Zhang, Y., Zhang, G. & Brusic, V., Aug 20 2017, ACM-BCB 2017 - Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 442-448 7 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

MCVdb: A database for knowledge discovery in Merkel cell polyomavirus with applications in T cell immunology and vaccinology

Zhang, G. L., DeCaprio, J. A., Chitkushev, L., Keskin, D. B., Wu, C. J. & Brusic, V., Dec 15 2017, Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017. Yoo, I., Zheng, J. H., Gong, Y., Hu, X. T., Shyu, C-R., Bromberg, Y., Gao, J. & Korkin, D. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 1483-1488 6 p. (Proceedings - 2017 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2017; vol. 2017-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2016

Zinc; HIF-1 Mimetic in Human Renal Proximal Tubular Cells

Ryoichi, B., Takiyama, Y., Manami, M., Atageldiyeva, K., Fujita, Y. & Haneda, M., Jun 1 2016, Zinc; HIF-1 Mimetic in Human Renal Proximal Tubular Cells. American Diabetes Association Inc., p. A137-A137

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2015

A New Player in Diabetic Nephropathy: Metallothionein 3 Is a Target for Hypoxia Inducible Factor-1

Takiyama, Y., Manami, M., Atageldiyeva, K., Yanagimachi, T., Honjo, J., Fujita, Y., Abiko, A. & Haneda, M., Jun 1 2015, A New Player in Diabetic Nephropathy: Metallothionein 3 Is a Target for Hypoxia Inducible Factor-1. American Diabetes Association Inc., p. A142-A142

Research output: Chapter in Book/Report/Conference proceedingConference contribution

High glucose induces membrane-bound transcription factor peptidase site1 via carbohydrate response element binding protein to modulate ER stress in mesangial cells

Makino, Y., Atageldiyeva, K., Kitsunai, H., Mizumoto, K., Yanagimachi, T., Fujita, Y., Abiko, A., Takiyama, Y. & Haneda, M., Sep 1 2015, High glucose induces membrane-bound transcription factor peptidase site1 via carbohydrate response element binding protein to modulate ER stress in mesangial cells. Springer Verlag, p. S538-S538

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Low carbohydrate diet and SGLT-2 inhibitors dissimilarly influenced on body weight and adiposity in normal mice

Atageldiyeva, K., Fujita, Y., Yanagimachi, T., Honjo, J., Abiko, A., Takiyama, Y., Makino, Y. & Haneda, M., Sep 1 2015, Low carbohydrate diet and SGLT-2 inhibitors dissimilarly influenced on body weight and adiposity in normal mice. Springer Verlag, Vol. 58. p. S365-S366

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2014

Antidote application: An educational system for treatment of common toxin overdose

Long, J., Brusic, V., Zhang, Y., Zhang, G. L. & Chitkushev, L., Sep 20 2014, ACM BCB 2014 - 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics. Association for Computing Machinery, Inc, p. 598-599 2 p. (ACM BCB 2014 - 5th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

SGLT2 Inhibitor Luseogliflozin (TS-071) Protects from Diabetic Nephropathy in an Animal Model of Type 2 Diabetes.

Takiyama, Y., R, B., Manami, M., Atageldiyeva, K., Yanagimachi, T., Honjo, J., Fujita, Y., Abiko, A., Makino, Y. & Haneda, M., Jun 2014, SGLT2 Inhibitor Luseogliflozin (TS-071) Protects from Diabetic Nephropathy in an Animal Model of Type 2 Diabetes.. American Diabetes Association Inc., p. A136-A136

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Zinc exerts anti-fibrotic action by inhibiting TGF-beta1-induced type I collagen and fibronectin in human renal proximal tubular cells

Takiyama, Y., Manami, M., Atageldiyeva, K., Yanagimachi, T., Honjo, J., Fujita, Y., Makino, Y. & Haneda, M., Sep 1 2014, Zinc exerts anti-fibrotic action by inhibiting TGF-beta1-induced type I collagen and fibronectin in human renal proximal tubular cells. Springer Verlag

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2013

Biomarkers in immunology: From concepts to applications

Zhang, P., Chitkushev, L., Brusic, V. & Zhang, G. L., 2013, 2013 ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB 2013. p. 826-835 10 p. (2013 ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

HPVdb: A Data mining system for knowledge discovery in human papillomavirus with applications in T cell immunology and vaccinology

Zhang, G. L., Riemer, A., Keskin, D. B., Chitkushev, L., Reinherz, E. L. & Brusic, V., Nov 28 2013, 2013 ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB 2013. p. 843-848 6 p. (2013 ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Landscape of neutralizing assessment of monoclonal antibodies against dengue virus

Sun, J., Zhang, G. L., Olsen, L. R., Reinherz, E. L. & Brusic, V., 2013, 2013 ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB 2013. p. 836-842 7 p. (2013 ACM Conference on Bioinformatics, Computational Biology and Biomedical Informatics, ACM-BCB 2013).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)
2011

A cDNA microarray for rapid and economical identification of HLA profiles of individuals

Zhang, G. L., Reinherz, E. L., Keskin, D. B. & Brusic, V., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 677-679 3 p. 6112451. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

PRED mafa: A system for prediction of peptide binding to several MHC class i molecules in cynomolgus macaques

Zhang, G. L., O'Connor, D. H., Budde, M. L., Hildebrand, W. H., Lhost, J. J. & Brusic, V., Dec 1 2011, 2011 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2011. p. 602-606 5 p. (2011 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Probe design optimization of HLA microarray - Data cleaning of probe signals from cDNA tiling microarray: Outlier detection, noise reduction, and identification of uninformative probes in HLA typing application

Dilek, E., Zlateva, T., Zhang, G. L., Chitkushev, L., Lee, J. Y. & Brusic, V., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 680-682 3 p. 6112452. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Visualization tools for presenting and analysis of global landscapes of vaccine targets

Kalathur, S., Brusic, V., Zhang, G. L., Chitkushev, L. & Zlateva, T., Dec 1 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011. p. 683-688 6 p. 6112453. (2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2010

The ImmunoGrid simulator: How to use it

Pappalardo, F., Halling-Brown, M., Pennisi, M., Chiacchio, F., Sansom, C. E., Shepherd, A. J., Moss, D. S., Motta, S. & Brusic, V., Aug 26 2010, Computational Intelligence Methods for Bioinformatics and Biostatistics - 6th International Meeting, CIBB 2009, Revised Selected Papers. p. 1-19 19 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 6160 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2006

BioDArt - Catalogue of biological data artifact examples

Veeramani, A., Gopalakrishnan, K., Brusic, V. & Koh, J. L. Y., Dec 1 2006, ICBPE 2006 - Proceedings of the 2006 International Conference on Biomedical and Pharmaceutical Engineering. p. 324-329 6 p. 4155917. (ICBPE 2006 - Proceedings of the 2006 International Conference on Biomedical and Pharmaceutical Engineering).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Computational models for identifying promiscuous HLA-B7 binders based on information theory and support vector machine

Zhang, G. L., Tong, J. C., Zhang, Z. H., Zheng, Y., August, J. T., Kwoh, C. K. & Brusic, V., Dec 1 2006, ICBPE 2006 - Proceedings of the 2006 International Conference on Biomedical and Pharmaceutical Engineering. p. 319-323 5 p. 4155916. (ICBPE 2006 - Proceedings of the 2006 International Conference on Biomedical and Pharmaceutical Engineering).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Extreme learning machine for predicting HLA-peplide binding

Handoko, S. D., Keong, K. C., Soon, O. Y., Zhang, G. L. & Brusic, V., Jan 1 2006, Advances in Neural Networks - ISNN 2006: Third International Symposium on Neural Networks, ISNN 2006, Proceedings - Part III. Springer Verlag, p. 716-721 6 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3973 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

19 Citations (Scopus)

Functional prediction of snake neurotoxins

Seah, S. H., Kwoh, C. K., Brusic, V., Sakharkar, M. K. & Ng, G. S., Dec 1 2006, 9th International Conference on Control, Automation, Robotics and Vision, 2006, ICARCV '06. 4150399. (9th International Conference on Control, Automation, Robotics and Vision, 2006, ICARCV '06).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Incremental maintenance of biological databases using association rule mining

Lam, K. T., Koh, J. L. Y., Veeravalli, B. & Brusic, V., 2006, Pattern Recognition in Bioinformatics - International Workshop, PRIB 2006, Proceedings. Springer Verlag, p. 140-150 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4146 LNBI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
1 Citation (Scopus)

Multi-objective evolutionary algorithm for discovering peptide binding motifs

Rajapakse, M., Schmidt, B. & Brusic, V., Jul 14 2006, Applications of Evolutionary Computing - EvoWorkshops 2006: EvoBIO, EvoCOMNET, EvoHOT, EvoIASP, EvoINTERACTION, EvoMUSART, and EvoSTOC, Proceedings. p. 149-158 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3907 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Citations (Scopus)

Performance evaluation of MULTIEPD1 on prediction of MHC class i binders

Zhang, G. L., Kwoh, C. K., August, J. T. & Brusic, V., Dec 1 2006, ICBPE 2006 - Proceedings of the 2006 International Conference on Biomedical and Pharmaceutical Engineering. p. 307-313 7 p. 4155914. (ICBPE 2006 - Proceedings of the 2006 International Conference on Biomedical and Pharmaceutical Engineering).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Temporal and antigenic analysis of dengue virus serotype 1 genome polyprotein sequences

Rajapakse, M., Veeramani, A., Gopalakrishnan, K., Ananthanarayan, S., Khan, A. M., Srinivasan, K. N., August, J. T. & Brusic, V., Dec 1 2006, ICBPE 2006 - Proceedings of the 2006 International Conference on Biomedical and Pharmaceutical Engineering. p. 301-306 6 p. 4155913. (ICBPE 2006 - Proceedings of the 2006 International Conference on Biomedical and Pharmaceutical Engineering).

Research output: Chapter in Book/Report/Conference proceedingConference contribution