Analysis of plant diversity with retrotransposon-based molecular markers

R. Kalendar, A. J. Flavell, T. H.N. Ellis, T. Sjakste, C. Moisy, A. H. Schulman

Research output: Contribution to journalReview articlepeer-review

218 Citations (Scopus)


Retrotransposons are both major generators of genetic diversity and tools for detecting the genomic changes associated with their activity because they create large and stable insertions in the genome. After the demonstration that retrotransposons are ubiquitous, active and abundant in plant genomes, various marker systems were developed to exploit polymorphisms in retrotransposon insertion patterns. These have found applications ranging from the mapping of genes responsible for particular traits and the management of backcrossing programs to analysis of population structure and diversity of wild species. This review provides an insight into the spectrum of retrotransposon-based marker systems developed for plant species and evaluates the contributions of retrotransposon markers to the analysis of population diversity in plants.

Original languageEnglish
Pages (from-to)520-530
Number of pages11
Issue number4
Publication statusPublished - Apr 2011
Externally publishedYes


  • IRAP and REMAP
  • molecular marker
  • phylogeny
  • RBIP
  • retrotransposon
  • SSAP

ASJC Scopus subject areas

  • Genetics
  • Genetics(clinical)


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