Detection of various Thrombin concentrations using etched fiber Bragg gratings functionalized with DNA aptamer

M. Shaimerdenova, A. Bekmurzayeva, T. Ayupova, M. Sypabekova, S. Korganbayev, K. Dukenbayev, C. Molardi, D. Tosi

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

The response of etched fiber Bragg grating (EFBG) functionalized with 29-mer DNA aptamer to the different concentrations of Thrombin protein has been investigated. Etched FBGs are an efficient technology for detection of refractive index, and have been demonstrated also for biosensors applications. EFBGs have a simpler manufacturing approach comparing to other methodologies and are based on a low-cost device; their fabrication can be achieved by simple chemical etching, without requiring fusion splicing. During the test we assessed its feasibility for small variations of thrombin concentrations (10μg/ml, 20μg/ml, 40μg/ml and 80μg/ml). In particular, we performed experiments of chemical etching with hydrofluoric acid, which progressively depletes the fiber cladding exposing the core to the outer medium. Additionally, unstriped not etched FBGs were also used as a control for temperature pattern compensation. Before functionalization, EFBG was calibrated with different sucrose and ethanol solutions that validated the sensitivity to refractive index change. EFBG was further silanized with 3-Aminopropyl-triethoxysilane (APTES) in order to immobilize Thrombin binding aptamer on the silica surface of the fiber. The change of Bragg wavelength when functionalized EFBG is exposed to different concentrations of Thrombin using Micron Optics Hyperion si255-x55 sensing system was demonstrated. A small yet detectable sensitivity (several tens of nanomolars) even between small protein variations allows hypothesizing a future use of this kind of functionalized fiber for biosensor development.

Original languageEnglish
Title of host publicationOptics in Health Care and Biomedical Optics VIII
EditorsYing Gu, Qingming Luo, Xingde Li, Yuguo Tang, Dan Zhu
PublisherSPIE
Volume10820
ISBN (Electronic)9781510622388
DOIs
Publication statusPublished - Jan 1 2018
EventOptics in Health Care and Biomedical Optics VIII 2018 - Beijing, China
Duration: Oct 11 2018Oct 13 2018

Conference

ConferenceOptics in Health Care and Biomedical Optics VIII 2018
CountryChina
CityBeijing
Period10/11/1810/13/18

Fingerprint

Nucleotide Aptamers
thrombin
Fiber Grating
Fiber Bragg gratings
Bragg Grating
Thrombin
Bragg gratings
DNA
deoxyribonucleic acid
fibers
Biosensor
Fiber
Etching
Biosensors
Refractive Index
Fibers
Refractive index
Hydrofluoric Acid
Proteins
Protein

Keywords

  • aptamer
  • biosensor
  • etching
  • fiber Bragg grating (FBG)
  • optical fiber
  • refractive index
  • thrombin

ASJC Scopus subject areas

  • Electronic, Optical and Magnetic Materials
  • Condensed Matter Physics
  • Computer Science Applications
  • Applied Mathematics
  • Electrical and Electronic Engineering

Cite this

Shaimerdenova, M., Bekmurzayeva, A., Ayupova, T., Sypabekova, M., Korganbayev, S., Dukenbayev, K., ... Tosi, D. (2018). Detection of various Thrombin concentrations using etched fiber Bragg gratings functionalized with DNA aptamer. In Y. Gu, Q. Luo, X. Li, Y. Tang, & D. Zhu (Eds.), Optics in Health Care and Biomedical Optics VIII (Vol. 10820). [108200O] SPIE. https://doi.org/10.1117/12.2502457

Detection of various Thrombin concentrations using etched fiber Bragg gratings functionalized with DNA aptamer. / Shaimerdenova, M.; Bekmurzayeva, A.; Ayupova, T.; Sypabekova, M.; Korganbayev, S.; Dukenbayev, K.; Molardi, C.; Tosi, D.

Optics in Health Care and Biomedical Optics VIII. ed. / Ying Gu; Qingming Luo; Xingde Li; Yuguo Tang; Dan Zhu. Vol. 10820 SPIE, 2018. 108200O.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Shaimerdenova, M, Bekmurzayeva, A, Ayupova, T, Sypabekova, M, Korganbayev, S, Dukenbayev, K, Molardi, C & Tosi, D 2018, Detection of various Thrombin concentrations using etched fiber Bragg gratings functionalized with DNA aptamer. in Y Gu, Q Luo, X Li, Y Tang & D Zhu (eds), Optics in Health Care and Biomedical Optics VIII. vol. 10820, 108200O, SPIE, Optics in Health Care and Biomedical Optics VIII 2018, Beijing, China, 10/11/18. https://doi.org/10.1117/12.2502457
Shaimerdenova M, Bekmurzayeva A, Ayupova T, Sypabekova M, Korganbayev S, Dukenbayev K et al. Detection of various Thrombin concentrations using etched fiber Bragg gratings functionalized with DNA aptamer. In Gu Y, Luo Q, Li X, Tang Y, Zhu D, editors, Optics in Health Care and Biomedical Optics VIII. Vol. 10820. SPIE. 2018. 108200O https://doi.org/10.1117/12.2502457
Shaimerdenova, M. ; Bekmurzayeva, A. ; Ayupova, T. ; Sypabekova, M. ; Korganbayev, S. ; Dukenbayev, K. ; Molardi, C. ; Tosi, D. / Detection of various Thrombin concentrations using etched fiber Bragg gratings functionalized with DNA aptamer. Optics in Health Care and Biomedical Optics VIII. editor / Ying Gu ; Qingming Luo ; Xingde Li ; Yuguo Tang ; Dan Zhu. Vol. 10820 SPIE, 2018.
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