Measuring the implications of the D-basis in analysis of data in biomedical studies

Kira Adaricheva; J. B. Nation; Gordon Okimoto; Vyacheslav Adarichev; Adina Amanbekkyzy; Shuchismita Sarkar; Alibek Sailanbayev; Nazar Seidalin; Kenneth Alibek

doi:10.1007/978-3-319-19545-2_3

Measuring the implications of the D-basis in analysis of data in biomedical studies

Kira Adaricheva, J. B. Nation, Gordon Okimoto, Vyacheslav Adarichev, Adina Amanbekkyzy, Shuchismita Sarkar, Alibek Sailanbayev, Nazar Seidalin, Kenneth Alibek

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

4 Citations (Scopus)

Abstract

We introduce the parameter of relevance of an attribute of a binary table to another attribute of the same table, computed with respect to an implicational basis of a closure system associated with the table. This enables a ranking of all attributes, by relevance parameter to the same fixed attribute, and, as a consequence, reveals the implications of the basis most relevant to this attribute. As an application of this new metric, we test the algorithm for D-basis extraction presented in Adaricheva and Nation [1] on biomedical data related to the survival groups of patients with particular types of cancer. Each test case requires a specialized approach in converting the real-valued data into binary data and careful analysis of the transformed data in a multi-disciplinary environment of cross-field collaboration.

Original language	English
Title of host publication	Formal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings
Editors	Christian Sacarea, Manuel Ojeda-Aciego, Jaume Baixeries
Publisher	Springer Verlag
Pages	39-57
Number of pages	19
ISBN (Electronic)	9783319195445
DOIs	https://doi.org/10.1007/978-3-319-19545-2_3
Publication status	Published - 2015
Event	13th International Conference on Formal Concept Analysis, ICFCA 2015 - Nerja, Spain Duration: Jun 23 2015 → Jun 26 2015

Publication series

Name	Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science)
Volume	9113
ISSN (Print)	0302-9743

Other

Other	13th International Conference on Formal Concept Analysis, ICFCA 2015
Country	Spain
City	Nerja
Period	6/23/15 → 6/26/15

Keywords

Binary table
Blood biochemistry
D-basis
Galois lattice
Gene expression
Immune markers
Implicational basis
Infection
Relevance
Response to treatment
Support
Survival

ASJC Scopus subject areas

Theoretical Computer Science
Computer Science(all)

Access to Document

10.1007/978-3-319-19545-2_3

Fingerprint Dive into the research topics of 'Measuring the implications of the D-basis in analysis of data in biomedical studies'. Together they form a unique fingerprint.

Cite this

Adaricheva, K., Nation, J. B., Okimoto, G., Adarichev, V., Amanbekkyzy, A., Sarkar, S., Sailanbayev, A., Seidalin, N., & Alibek, K. (2015). Measuring the implications of the D-basis in analysis of data in biomedical studies. In C. Sacarea, M. Ojeda-Aciego, & J. Baixeries (Eds.), Formal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings (pp. 39-57). (Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science); Vol. 9113). Springer Verlag. https://doi.org/10.1007/978-3-319-19545-2_3

Measuring the implications of the D-basis in analysis of data in biomedical studies. / Adaricheva, Kira; Nation, J. B.; Okimoto, Gordon; Adarichev, Vyacheslav; Amanbekkyzy, Adina; Sarkar, Shuchismita; Sailanbayev, Alibek; Seidalin, Nazar; Alibek, Kenneth.

Formal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings. ed. / Christian Sacarea; Manuel Ojeda-Aciego; Jaume Baixeries. Springer Verlag, 2015. p. 39-57 (Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science); Vol. 9113).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Adaricheva, K, Nation, JB, Okimoto, G, Adarichev, V, Amanbekkyzy, A, Sarkar, S, Sailanbayev, A, Seidalin, N & Alibek, K 2015, Measuring the implications of the D-basis in analysis of data in biomedical studies. in C Sacarea, M Ojeda-Aciego & J Baixeries (eds), Formal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings. Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science), vol. 9113, Springer Verlag, pp. 39-57, 13th International Conference on Formal Concept Analysis, ICFCA 2015, Nerja, Spain, 6/23/15. https://doi.org/10.1007/978-3-319-19545-2_3

Adaricheva K, Nation JB, Okimoto G, Adarichev V, Amanbekkyzy A, Sarkar S et al. Measuring the implications of the D-basis in analysis of data in biomedical studies. In Sacarea C, Ojeda-Aciego M, Baixeries J, editors, Formal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings. Springer Verlag. 2015. p. 39-57. (Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science)). https://doi.org/10.1007/978-3-319-19545-2_3

Adaricheva, Kira ; Nation, J. B. ; Okimoto, Gordon ; Adarichev, Vyacheslav ; Amanbekkyzy, Adina ; Sarkar, Shuchismita ; Sailanbayev, Alibek ; Seidalin, Nazar ; Alibek, Kenneth. / Measuring the implications of the D-basis in analysis of data in biomedical studies. Formal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings. editor / Christian Sacarea ; Manuel Ojeda-Aciego ; Jaume Baixeries. Springer Verlag, 2015. pp. 39-57 (Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science)).

@inproceedings{a6aaf26fd9ed49778868b1344ce1df5d,

title = "Measuring the implications of the D-basis in analysis of data in biomedical studies",

abstract = "We introduce the parameter of relevance of an attribute of a binary table to another attribute of the same table, computed with respect to an implicational basis of a closure system associated with the table. This enables a ranking of all attributes, by relevance parameter to the same fixed attribute, and, as a consequence, reveals the implications of the basis most relevant to this attribute. As an application of this new metric, we test the algorithm for D-basis extraction presented in Adaricheva and Nation [1] on biomedical data related to the survival groups of patients with particular types of cancer. Each test case requires a specialized approach in converting the real-valued data into binary data and careful analysis of the transformed data in a multi-disciplinary environment of cross-field collaboration.",

keywords = "Binary table, Blood biochemistry, D-basis, Galois lattice, Gene expression, Immune markers, Implicational basis, Infection, Relevance, Response to treatment, Support, Survival",

author = "Kira Adaricheva and Nation, {J. B.} and Gordon Okimoto and Vyacheslav Adarichev and Adina Amanbekkyzy and Shuchismita Sarkar and Alibek Sailanbayev and Nazar Seidalin and Kenneth Alibek",

year = "2015",

doi = "10.1007/978-3-319-19545-2_3",

language = "English",

series = "Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science)",

publisher = "Springer Verlag",

pages = "39--57",

editor = "Christian Sacarea and Manuel Ojeda-Aciego and Jaume Baixeries",

booktitle = "Formal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings",

address = "Germany",

note = "13th International Conference on Formal Concept Analysis, ICFCA 2015 ; Conference date: 23-06-2015 Through 26-06-2015",

}

TY - GEN

T1 - Measuring the implications of the D-basis in analysis of data in biomedical studies

AU - Adaricheva, Kira

AU - Nation, J. B.

AU - Okimoto, Gordon

AU - Adarichev, Vyacheslav

AU - Amanbekkyzy, Adina

AU - Sarkar, Shuchismita

AU - Sailanbayev, Alibek

AU - Seidalin, Nazar

AU - Alibek, Kenneth

PY - 2015

Y1 - 2015

N2 - We introduce the parameter of relevance of an attribute of a binary table to another attribute of the same table, computed with respect to an implicational basis of a closure system associated with the table. This enables a ranking of all attributes, by relevance parameter to the same fixed attribute, and, as a consequence, reveals the implications of the basis most relevant to this attribute. As an application of this new metric, we test the algorithm for D-basis extraction presented in Adaricheva and Nation [1] on biomedical data related to the survival groups of patients with particular types of cancer. Each test case requires a specialized approach in converting the real-valued data into binary data and careful analysis of the transformed data in a multi-disciplinary environment of cross-field collaboration.

AB - We introduce the parameter of relevance of an attribute of a binary table to another attribute of the same table, computed with respect to an implicational basis of a closure system associated with the table. This enables a ranking of all attributes, by relevance parameter to the same fixed attribute, and, as a consequence, reveals the implications of the basis most relevant to this attribute. As an application of this new metric, we test the algorithm for D-basis extraction presented in Adaricheva and Nation [1] on biomedical data related to the survival groups of patients with particular types of cancer. Each test case requires a specialized approach in converting the real-valued data into binary data and careful analysis of the transformed data in a multi-disciplinary environment of cross-field collaboration.

KW - Binary table

KW - Blood biochemistry

KW - D-basis

KW - Galois lattice

KW - Gene expression

KW - Immune markers

KW - Implicational basis

KW - Infection

KW - Relevance

KW - Response to treatment

KW - Support

KW - Survival

UR - http://www.scopus.com/inward/record.url?scp=84958528471&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=84958528471&partnerID=8YFLogxK

U2 - 10.1007/978-3-319-19545-2_3

DO - 10.1007/978-3-319-19545-2_3

M3 - Conference contribution

AN - SCOPUS:84958528471

T3 - Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science)

SP - 39

EP - 57

BT - Formal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings

A2 - Sacarea, Christian

A2 - Ojeda-Aciego, Manuel

A2 - Baixeries, Jaume

PB - Springer Verlag

T2 - 13th International Conference on Formal Concept Analysis, ICFCA 2015

Y2 - 23 June 2015 through 26 June 2015

ER -