Measuring the implications of the D-basis in analysis of data in biomedical studies

Kira Adaricheva, J. B. Nation, Gordon Okimoto, Vyacheslav Adarichev, Adina Amanbekkyzy, Shuchismita Sarkar, Alibek Sailanbayev, Nazar Seidalin, Kenneth Alibek

Research output: Chapter in Book/Report/Conference proceedingConference contribution

3 Citations (Scopus)

Abstract

We introduce the parameter of relevance of an attribute of a binary table to another attribute of the same table, computed with respect to an implicational basis of a closure system associated with the table. This enables a ranking of all attributes, by relevance parameter to the same fixed attribute, and, as a consequence, reveals the implications of the basis most relevant to this attribute. As an application of this new metric, we test the algorithm for D-basis extraction presented in Adaricheva and Nation [1] on biomedical data related to the survival groups of patients with particular types of cancer. Each test case requires a specialized approach in converting the real-valued data into binary data and careful analysis of the transformed data in a multi-disciplinary environment of cross-field collaboration.

Original languageEnglish
Title of host publicationFormal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings
PublisherSpringer Verlag
Pages39-57
Number of pages19
Volume9113
ISBN (Print)9783319195445
DOIs
Publication statusPublished - 2015
Event13th International Conference on Formal Concept Analysis, ICFCA 2015 - Nerja, Spain
Duration: Jun 23 2015Jun 26 2015

Other

Other13th International Conference on Formal Concept Analysis, ICFCA 2015
CountrySpain
CityNerja
Period6/23/156/26/15

Fingerprint

Attribute
Table
Binary Data
Cancer
Ranking
Closure
Binary
Metric
Relevance

Keywords

  • Binary table
  • Blood biochemistry
  • D-basis
  • Galois lattice
  • Gene expression
  • Immune markers
  • Implicational basis
  • Infection
  • Relevance
  • Response to treatment
  • Support
  • Survival

ASJC Scopus subject areas

  • Computer Science(all)
  • Theoretical Computer Science

Cite this

Adaricheva, K., Nation, J. B., Okimoto, G., Adarichev, V., Amanbekkyzy, A., Sarkar, S., ... Alibek, K. (2015). Measuring the implications of the D-basis in analysis of data in biomedical studies. In Formal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings (Vol. 9113, pp. 39-57). Springer Verlag. https://doi.org/10.1007/978-3-319-19545-2_3

Measuring the implications of the D-basis in analysis of data in biomedical studies. / Adaricheva, Kira; Nation, J. B.; Okimoto, Gordon; Adarichev, Vyacheslav; Amanbekkyzy, Adina; Sarkar, Shuchismita; Sailanbayev, Alibek; Seidalin, Nazar; Alibek, Kenneth.

Formal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings. Vol. 9113 Springer Verlag, 2015. p. 39-57.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Adaricheva, K, Nation, JB, Okimoto, G, Adarichev, V, Amanbekkyzy, A, Sarkar, S, Sailanbayev, A, Seidalin, N & Alibek, K 2015, Measuring the implications of the D-basis in analysis of data in biomedical studies. in Formal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings. vol. 9113, Springer Verlag, pp. 39-57, 13th International Conference on Formal Concept Analysis, ICFCA 2015, Nerja, Spain, 6/23/15. https://doi.org/10.1007/978-3-319-19545-2_3
Adaricheva K, Nation JB, Okimoto G, Adarichev V, Amanbekkyzy A, Sarkar S et al. Measuring the implications of the D-basis in analysis of data in biomedical studies. In Formal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings. Vol. 9113. Springer Verlag. 2015. p. 39-57 https://doi.org/10.1007/978-3-319-19545-2_3
Adaricheva, Kira ; Nation, J. B. ; Okimoto, Gordon ; Adarichev, Vyacheslav ; Amanbekkyzy, Adina ; Sarkar, Shuchismita ; Sailanbayev, Alibek ; Seidalin, Nazar ; Alibek, Kenneth. / Measuring the implications of the D-basis in analysis of data in biomedical studies. Formal Concept Analysis - 13th International Conference, ICFCA 2015, Proceedings. Vol. 9113 Springer Verlag, 2015. pp. 39-57
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