TY - JOUR
T1 - Reme1, a Copia retrotransposon in melon, is transcriptionally induced by UV light
AU - Ramallo, Elisenda
AU - Kalendar, Ruslan
AU - Schulman, Alan H.
AU - Martínez-Izquierdo, José A.
N1 - Funding Information:
Acknowledgments The authors are indebted to IRTA and Semillas Fitó for plant material and to IRTA for Southern blot membranes. We are grateful to Dr. Van Leeuwen for providing the melon BAC library, to Dr. A. Caño, A. Mascarell and D. Gonzalez-Ibeas (CSIC) for providing the primers sequences of a melon EF gene and functional information about it and to IBMB (CSIC) technicians for support, especially those from the sequencing service. E.R. was the recipient of a collaborative CSIC-industry Fellowship: CSIC-Semillas Fitó S.A., a contract from the Spanish Biotechnology National Plan (BIO99-1175), a travel grant from the ESF for a stay in the laboratory of A.H.S. where the work was supported by a grant from the Academy of Finland (project 53453), and a grant from Consorci CSIC-IRTA. Some funds for this study were provided by CERBA (Gen-eralitat of Catalonia). This work was mainly supported by the grant BIO99-1175 (CICYT) from the MEC of Spanish Govern to J.A.M.I.
Copyright:
Copyright 2008 Elsevier B.V., All rights reserved.
PY - 2008/1
Y1 - 2008/1
N2 - For the first time, numerous sequences of Copia and Gypsy retrotransposons from the Cucumis melo genome have been obtained and analyzed. Phylogenetic analyses of sequences of both types of long terminal repeat (LTR) retrotransposons were carried out. The melon genome contains approximately 20,000 Gypsy and 6,800 Copia elements, comprising about 26% of its total size. Starting from a retrotransposon fragment, we have cloned and characterized an entire melon retrotransposon, named Reme1, which is 5,149 bp long. Reme1 belongs to the Superfamily Copia retrotransposons by its protein domain order and sequence similarity to other Copia elements of dicotyledons. The haploid genome of melon (var. "Piel de Sapo") contains about 120 copies of Reme1. Several copies of Reme1 are transcriptionally active, although at low levels, in melon leaves as analyzed by reverse-transcription PCR (RT-PCR) and sequencing. However, the transcript pool is considerably increased when melon leaves are treated with UV light, as has been seen for various retroelements in many organisms. The cDNAs of Reme1 transcripts showed less diversity than do Reme1 genomic sequences, suggesting that a subfamily of these elements is differentially responsive to UV.
AB - For the first time, numerous sequences of Copia and Gypsy retrotransposons from the Cucumis melo genome have been obtained and analyzed. Phylogenetic analyses of sequences of both types of long terminal repeat (LTR) retrotransposons were carried out. The melon genome contains approximately 20,000 Gypsy and 6,800 Copia elements, comprising about 26% of its total size. Starting from a retrotransposon fragment, we have cloned and characterized an entire melon retrotransposon, named Reme1, which is 5,149 bp long. Reme1 belongs to the Superfamily Copia retrotransposons by its protein domain order and sequence similarity to other Copia elements of dicotyledons. The haploid genome of melon (var. "Piel de Sapo") contains about 120 copies of Reme1. Several copies of Reme1 are transcriptionally active, although at low levels, in melon leaves as analyzed by reverse-transcription PCR (RT-PCR) and sequencing. However, the transcript pool is considerably increased when melon leaves are treated with UV light, as has been seen for various retroelements in many organisms. The cDNAs of Reme1 transcripts showed less diversity than do Reme1 genomic sequences, suggesting that a subfamily of these elements is differentially responsive to UV.
KW - Copia
KW - Cucumis melo
KW - Genome dynamics
KW - LTR retrotransposon
KW - Stress-induced transcription
KW - UV light
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U2 - 10.1007/s11103-007-9258-4
DO - 10.1007/s11103-007-9258-4
M3 - Article
C2 - 18034313
AN - SCOPUS:37449001326
SN - 0167-4412
VL - 66
SP - 137
EP - 150
JO - Plant Molecular Biology
JF - Plant Molecular Biology
IS - 1-2
ER -
